Evidence map›Paper›PMID 38167383›Full record

ArticleNature communications2024

Lipid nanodisc scaffold and size alter the structure of a pentameric ligand-gated ion channel.

Vikram Dalal, Mark J Arcario, John T Petroff, Brandon K Tan, Noah M Dietzen, Michael J Rau, James A J Fitzpatrick, Grace Brannigan, Wayland W L Cheng

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
38.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
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  3. Human GlyRα2 pore dynamics in gating and inhibition.Structure (London, England : 1993) · 2026
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  8. Review
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  11. Examining the thermotropic properties of large circularized nanodiscs.Biochimica et biophysica acta. Biomembranes · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Vikram Dalal *Department of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
Mark J Arcario *Department of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.ORCID 0000-0001-5017-1519
John T PetroffDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
Brandon K TanDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
Noah M DietzenDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA.
Michael J RauCenter for Cellular Imaging, Washington University School of Medicine, Saint Louis, MO, USA.ORCID 0000-0001-5170-2000
James A J FitzpatrickCenter for Cellular Imaging, Washington University School of Medicine, Saint Louis, MO, USA.
Grace BranniganCenter for Computational and Integrative Biology, Rutgers University, Camden, NJ, USA.
Wayland W L ChengDepartment of Anesthesiology, Washington University School of Medicine, Saint Louis, MO, USA. wayland.cheng@wustl.edu.ORCID 0000-0002-9529-9820
Washington University in St. Louis · USRutgers, The State University of New Jersey · US

Funding

TRAINING PROGRAM IN ANESTHESIOLOGY RESEARCHT32GM108539 · NIGMS · WASHINGTON UNIVERSITY · PI Aaron J Norris · 2014 to 2026
$4.9M
Lipid Modulation of Ligand-Gated Ion ChannelsR35GM137957 · NIGMS · WASHINGTON UNIVERSITY · PI Wayland Wing-Lun Cheng · 2020 to 2026
$2.9M
Unraveling how Lipophilic Modulators Alter pLGIC Function via Interactions with the M4 Transmembrane HelixK08GM152844 · NIGMS · WASHINGTON UNIVERSITY · PI Mark Joseph Arcario · 2023 to 2026
$743k
Structural determinants of lipid modulation of ligand-gated ion channelsF32GM139351 · NIGMS · WASHINGTON UNIVERSITY · PI PETROFF , JOHN T · 2020 to 2022
$134k
NIGMS NIH HHS F32 GM139351NIGMS NIH HHS K08 GM152844NIGMS NIH HHS R35 GM137957NIGMS NIH HHS T32 GM108539
6 · The paper itself

Abstract

Lipid nanodiscs have become a standard tool for studying membrane proteins, including using single particle cryo-electron microscopy (cryo-EM). We find that reconstituting the pentameric ligand-gated ion channel (pLGIC), Erwinia ligand-gated ion channel (ELIC), in different nanodiscs produces distinct structures by cryo-EM. The effect of the nanodisc on ELIC structure extends to the extracellular domain and agonist binding site. Additionally, molecular dynamic simulations indicate that nanodiscs of different size impact ELIC structure and that the nanodisc scaffold directly interacts with ELIC. These findings suggest that the nanodisc plays a crucial role in determining the structure of pLGICs, and that reconstitution of ion channels in larger nanodiscs may better approximate a lipid membrane environment.

Indexed as

Ligand-Gated Ion ChannelsBinding SitesCryoelectron MicroscopyLipidsModels, MolecularLigand-Gated Ion ChannelsLipids

Identifiers

PMID38167383
PMCPMC10762164
OpenAlexW4390500418

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.