Evidence map›Paper›PMID 38166690›Full record

ArticleBMC medical imaging2024

A predicted-loss based active learning approach for robust cancer pathology image analysis in the workplace.

Mujin Kim, Willmer Rafell Quiñones Robles, Young Sin Ko, Bryan Wong, Sol Lee, Mun Yong Yi

Open access · goldAbstract read
In one paragraph

Article in BMC medical imaging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Mujin KimGraduate School of Data Science, Department of Industrial and Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
Willmer Rafell Quiñones RoblesGraduate School of Data Science, Department of Industrial and Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
Young Sin KoPathology Center, Seegene Medical Foundation, Seoul, South Korea.
Bryan WongGraduate School of Data Science, Department of Industrial and Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
Sol LeeGraduate School of Data Science, Department of Industrial and Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
Mun Yong YiGraduate School of Data Science, Department of Industrial and Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon, South Korea. munyi@kaist.ac.kr.
Korea Advanced Institute of Science and Technology · KR

Funding

Seegene Medical Foundation, South Korea, under the project "Research on Developing a Next Generation Medical Diagnosis System Using Deep Learning" G01180115
6 · The paper itself

Abstract

backgroundConvolutional neural network-based image processing research is actively being conducted for pathology image analysis. As a convolutional neural network model requires a large amount of image data for training, active learning (AL) has been developed to produce efficient learning with a small amount of training data. However, existing studies have not specifically considered the characteristics of pathological data collected from the workplace. For various reasons, noisy patches can be selected instead of clean patches during AL, thereby reducing its efficiency. This study proposes an effective AL method for cancer pathology that works robustly on noisy datasets.

methodsOur proposed method to develop a robust AL approach for noisy histopathology datasets consists of the following three steps: 1) training a loss prediction module, 2) collecting predicted loss values, and 3) sampling data for labeling. This proposed method calculates the amount of information in unlabeled data as predicted loss values and removes noisy data based on predicted loss values to reduce the rate at which noisy data are selected from the unlabeled dataset. We identified a suitable threshold for optimizing the efficiency of AL through sensitivity analysis.

resultsWe compared the results obtained with the identified threshold with those of existing representative AL methods. In the final iteration, the proposed method achieved a performance of 91.7% on the noisy dataset and 92.4% on the clean dataset, resulting in a performance reduction of less than 1%. Concomitantly, the noise selection ratio averaged only 2.93% on each iteration.

conclusionsThe proposed AL method showed robust performance on datasets containing noisy data by avoiding data selection in predictive loss intervals where noisy data are likely to be distributed. The proposed method contributes to medical image analysis by screening data and producing a robust and effective classification model tailored for cancer pathology image processing in the workplace.

Indexed as

Image Processing, Computer-AssistedNeoplasmsHumansNeural Networks, ComputerWorkplaceActive learning strategyCancer pathology imagesConvolutional neural networksDeep learningHistopathology image analysisNoisy dataPredicted loss

Identifiers

PMID38166690
PMCPMC10763414
OpenAlexW4390509028

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.