Evidence map›Paper›PMID 38166621›Full record

ArticleBMC genomic data2024

Draft genome assemblies for two species of Escallonia (Escalloniales).

Andre S Chanderbali, Christopher Dervinis, Ioana G Anghel, Douglas E Soltis, Pamela S Soltis, Felipe Zapata

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomic data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
3.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Andre S ChanderbaliFlorida Museum of Natural History, University of Florida, Gainesville, FL, USA. achander@ufl.edu.
Christopher DervinisSchool of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, FL, USA.
Ioana G AnghelDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA.
Douglas E SoltisFlorida Museum of Natural History, University of Florida, Gainesville, FL, USA.
Pamela S SoltisFlorida Museum of Natural History, University of Florida, Gainesville, FL, USA.
Felipe ZapataDepartment of Ecology and Evolutionary Biology and Center for Tropical Research, Institute of the Environment and Sustainability, University of California, Los Angeles, CA, USA.
Florida Museum of Natural History · USUniversity of California, Los Angeles · USUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesEscallonia (Escalloniaceae) belongs to the Escalloniales, a diverse clade of flowering plants with unclear placement in the tree of life. Escallonia species show impressive morphological and ecological diversity and are widely distributed across three hotspots of biodiversity in the Neotropics. To shed light on the genomic substrate of this radiation and the phylogenetic placement of Escalloniales as well as to generate useful data for comparative evolutionary genomics across flowering plants, we produced and annotated draft genomes for two species of Escallonia. DATA DESCRIPTION: Genomic DNA from E. rubra and E. herrerae was sequenced with Oxford Nanopore sequencing chemistry, generating 3.4 and 12 million sequence reads with an average read length of 9.4 and 9.1 Kb (approximately 31 and 111 Gb of sequence data), respectively. In addition, we generated Illumina 100-bp paired-end short read data for E. rubra (approximately 75 Gb of sequence data). The Escallonia rubra genome was 566 Mb, with 3,233 contigs and an N50 of 285 Kb. The assembled genome for E. herrerae was 994 Mp, with 5,760 contigs and an N50 of 317 Kb. The genome sequences were annotated with 31,038 (E. rubra) and 47,905 (E. herrerea) protein-coding gene models supported by transcriptome/protein evidence and/or Pfam domain content. BUSCO assessments indicated completeness levels of approximately 98% for the genome assemblies and 88% for the genome annotations.

Indexed as

GenomicsMagnoliopsidaGenomePhylogenyTranscriptomeAndesCampanulidaeEscallonia herreraeEscallonia rubraGenomicsOxford Nanopore Technology

Identifiers

PMID38166621
PMCPMC10759652
OpenAlexW4390495698

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.