Evidence map›Paper›PMID 38166420›Full record

ArticleExperimental biology and medicine (Maywood, N.J.)2023

RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling.

Leihong Wu, Magnus Gray, Oanh Dang, Joshua Xu, Hong Fang, Weida Tong

Abstract read
In one paragraph

Article in Experimental biology and medicine (Maywood, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
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  5. Article
  6. Article
  7. Review
  8. Integrating artificial intelligence with bioinformatics promotes public health.Experimental biology and medicine (Maywood, N.J.) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Leihong WuDivision of Bioinformatics and Biostatistics, FDA National Center for Toxicological Research, Jefferson, AR 72079, USA.ORCID 0000-0002-4093-3708
Magnus GrayDivision of Bioinformatics and Biostatistics, FDA National Center for Toxicological Research, Jefferson, AR 72079, USA.ORCID 0009-0009-6355-7627
Oanh DangOffice of Surveillance and Epidemiology, FDA Center for Drug Evaluation and Research, Silver Spring, MD 20993, USA.
Joshua XuDivision of Bioinformatics and Biostatistics, FDA National Center for Toxicological Research, Jefferson, AR 72079, USA.ORCID 0000-0001-5313-5847
Hong FangOffice of Scientific Coordination, FDA National Center for Toxicological Research, Jefferson, AR 72079, USA.
Weida TongDivision of Bioinformatics and Biostatistics, FDA National Center for Toxicological Research, Jefferson, AR 72079, USA.ORCID 0000-0003-3488-6148

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The US drug labeling document contains essential information on drug efficacy and safety, making it a crucial regulatory resource for Food and Drug Administration (FDA) drug reviewers. Due to its extensive volume and the presence of free-text, conventional text mining analysis have encountered challenges in processing these data. Recent advances in artificial intelligence (AI) for natural language processing (NLP) have provided an unprecedented opportunity to identify key information from drug labeling, thereby enhancing safety reviews and support for regulatory decisions. We developed RxBERT, a Bidirectional Encoder Representations from Transformers (BERT) model pretrained on FDA human prescription drug labeling documents for an enhanced application of drug labeling documents in both research and drug review. RxBERT was derived from BioBERT with further training on human prescription drug labeling documents. RxBERT was demonstrated in several tasks using regulatory datasets, including those involved in the National Institutes of Technology Text Analysis Challenge Dataset (NIST TAC dataset), the FDA Adverse Drug Event Evaluation Dataset (ADE Eval dataset), and the classification of texts from submission packages into labeling sections (US Drug Labeling dataset). For all these tasks, RxBERT reached 86.5

Indexed as

Drug-Related Side Effects and Adverse ReactionsPrescription DrugsArtificial IntelligenceData MiningDrug LabelingHumansUnited StatesPrescription DrugsArtificial intelligenceBERTdrug labelinglanguage modelnatural language processingpharmacovigilance

Identifiers

PMID38166420
PMCPMC10798181

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.