Evidence map›Paper›PMID 38165941›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

A TLR4/TRAF6-dependent signaling pathway mediates NCoR coactivator complex formation for inflammatory gene activation.

Yohei Abe, Eric R Kofman, Zhengyu Ouyang, Grisel Cruz-Becerra, Nathanael J Spann, Jason S Seidman, Ty D Troutman, Joshua D Stender, Havilah Taylor, Weiwei Fan and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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  3. Landscape of NFrontiers in microbiology · 2026
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  15. Functional inversion of circadian regulator REV-ERBα leads to tumorigenic gene reprogramming.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Review
  17. A TLR4/TRAF6-dependent signaling pathway mediates NCoR coactivator complex formation for inflammatory gene activation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Yohei AbeDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Eric R KofmanDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Zhengyu OuyangDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Grisel Cruz-BecerraDepartment of Molecular Biology, University of California San Diego, La Jolla, CA 92093.
Nathanael J SpannDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0001-7828-6123
Jason S SeidmanDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Ty D TroutmanDepartment of Medicine, University of California San Diego, La Jolla, CA 92093.
Joshua D StenderDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Havilah TaylorDepartment and School of Medicine, University of California San Diego, La Jolla, CA 92093.
Weiwei FanGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037.
Verena M LinkDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Zeyang ShenDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.
Juro SakaiDivision of Metabolic Medicine, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo 153-8904, Japan.ORCID 0000-0003-4043-1035
Michael DownesGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037.ORCID 0000-0002-6351-9585
Ronald M EvansGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037.ORCID 0000-0002-9986-5965
James T KadonagaDepartment of Molecular Biology, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-2075-9458
Michael G RosenfeldDepartment and School of Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-1572-156X
Christopher K GlassDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0003-4344-3592
University of California San Diego · USSalk Institute for Biological Studies · USCincinnati Children's Hospital Medical Center · USTohoku University · JP

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Ye Zheng · 1985 to 2026
$82.8M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
Transcriptional GenomicsP01HL088093 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WITZTUM, JOSEPH L. · 2008 to 2018
$26.4M
SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Tissue-specific roles of FXR in CVD and NASHP01HL147835 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LOOMBA, ROHIT · 2020 to 2024
$12.2M
Transcriptional co-regulators and macrophage gene expressionR01DK091183 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLASS, CHRISTOPHER K · 2011 to 2025
$9.9M
Mechanisms of Eukaryotic Gene RegulationR35GM118060 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI James T. Kadonaga · 2016 to 2026
$7.5M
REGULATION OF NEUROENDOCRINE SWITCHING EVENTSR01DK039949 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROSENFELD, MICHAEL G · 1996 to 2024
$2.4M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
NCI NIH HHS P30 CA014195NHLBI NIH HHS P01 HL088093NHLBI NIH HHS P01 HL147835NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01 DK039949NIDDK NIH HHS R01 DK091183NIGMS NIH HHS P50 GM085764NIGMS NIH HHS R35 GM118060NIH HHS S10 OD026929
6 · The paper itself

Abstract

The nuclear receptor corepressor (NCoR) forms a complex with histone deacetylase 3 (HDAC3) that mediates repressive functions of unliganded nuclear receptors and other transcriptional repressors by deacetylation of histone substrates. Recent studies provide evidence that NCoR/HDAC3 complexes can also exert coactivator functions in brown adipocytes by deacetylating and activating PPARγ coactivator 1α (PGC1α) and that signaling via receptor activator of nuclear factor kappa-B (RANK) promotes the formation of a stable NCoR/HDAC3/PGC1β complex that coactivates nuclear factor kappa-B (NFκB)- and activator protein 1 (AP-1)-dependent genes required for osteoclast differentiation. Here, we demonstrate that activation of Toll-like receptor (TLR) 4, but not TLR3, the interleukin 4 (IL4) receptor nor the Type I interferon receptor, also promotes assembly of an NCoR/HDAC3/PGC1β coactivator complex. Receptor-specific utilization of TNF receptor-associated factor 6 (TRAF6) and downstream activation of extracellular signal-regulated kinase 1 (ERK1) and TANK-binding kinase 1 (TBK1) accounts for the common ability of RANK and TLR4 to drive assembly of an NCoR/HDAC3/PGC1β complex in macrophages. ERK1, the p65 component of NFκB, and the p300 histone acetyltransferase (HAT) are also components of the induced complex and are associated with local histone acetylation and transcriptional activation of TLR4-dependent enhancers and promoters. These observations identify a TLR4/TRAF6-dependent signaling pathway that converts NCoR from a corepressor of nuclear receptors to a coactivator of NFκB and AP-1 that may be relevant to functions of NCoR in other developmental and homeostatic processes.

Indexed as

HistonesTNF Receptor-Associated Factor 6Co-Repressor ProteinsNF-kappa BReceptors, Cytoplasmic and NuclearSignal TransductionToll-Like Receptor 4Transcriptional ActivationTranscription Factor AP-1Co-Repressor ProteinsHistonesNF-kappa BReceptors, Cytoplasmic and NuclearTNF Receptor-Associated Factor 6Toll-Like Receptor 4Transcription Factor AP-1macrophageNCoRPGC1βTLR4TRAF6

Identifiers

PMID38165941
PMCPMC10786282
OpenAlexW4390496646

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.