Evidence map›Paper›PMID 38165806›Full record

ArticleCell reports2024

Metabolic reprogramming by histone deacetylase inhibition preferentially targets NRF2-activated tumors.

Dimitris Karagiannis, Warren Wu, Albert Li, Makiko Hayashi, Xiao Chen, Michaela Yip, Vaibhav Mangipudy, Xinjing Xu, Francisco J Sánchez-Rivera, Yadira M Soto-Feliciano and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  7. [Inhibition of BRD4 promotes migration of esophageal squamous cell carcinoma cells with low ACC1 expression].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2025
    Article
  8. Translational lung cancer research · 2025
    Article
  9. Review
  10. Article
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  12. Article
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  15. Article
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  18. Cuproptosis and Cu: a new paradigm in cellular death and their role in non-cancerous diseases.Apoptosis : an international journal on programmed cell death · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Dimitris KaragiannisDepartment of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA.
Warren WuDepartment of Pathology, New York University Grossman School of Medicine, New York, NY 10016, USA.
Albert LiDepartment of Radiation Oncology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Makiko HayashiDepartment of Pathology, New York University Grossman School of Medicine, New York, NY 10016, USA.
Xiao ChenDepartment of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA.
Michaela YipDepartment of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA.
Vaibhav MangipudyDepartment of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA.
Xinjing XuDepartment of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA.
Francisco J Sánchez-RiveraDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Yadira M Soto-FelicianoDavid H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Jiangbin YeDepartment of Radiation Oncology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Thales PapagiannakopoulosDepartment of Pathology, New York University Grossman School of Medicine, New York, NY 10016, USA; Laura and Isaac Perlmutter NYU Cancer Center, New York University Grossman School of Medicine, New York, NY 10016, USA.
Chao LuDepartment of Genetics and Development, Columbia University Irving Medical Center, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY 10032, USA. Electronic address: cl3684@cumc.columbia.edu.
Columbia University Irving Medical Center · USNew York University · USMassachusetts Institute of Technology · USStanford University · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Richard Lewis Possemato · 1985 to 2026
$83.1M
National Metabolomics Data Repository - nextgen Metabolomics WorkbenchU2CDK119886 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2018 to 2021
$12.7M
Biomedical Data Commons Workbench (BDCW)OT2OD030544 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2020 to 2024
$3.2M
Epigenetic Regulation of Head and Neck Cancer Immune EvasionR01DE031873 · NIDCR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Chao Lu · 2022 to 2026
$2.3M
Regulation and Function of Histone H3K36 Methylation in Mammalian ChromatinR35GM138181 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LU, CHAO · 2020 to 2024
$2.0M
Translational Research in Oncology Training ProgramT32CA160001 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SAWYERS, CHARLES L. · 2011 to 2020
$2.0M
Web Portal CoreU2CDK119889 · NIDDK · UNIVERSITY OF FLORIDA · PI CONLON, MICHAEL, GARRETT, TIMOTHY J · 2018 to 2021
$1.9M
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Understanding mechanisms of transcriptional regulation by chromatin adaptor proteinsK99GM140265 · NIGMS · ROCKEFELLER UNIVERSITY · PI SOTO-FELICIANO, YADIRA M · 2021 to 2021
$100k
NCI NIH HHS P30 CA016087NCI NIH HHS T32 CA160001NIDCR NIH HHS R01 DE031873NIDDK NIH HHS U2C DK119886NIDDK NIH HHS U2C DK119889NIGMS NIH HHS K99 GM140265NIGMS NIH HHS R35 GM138181NIH HHS OT2 OD030544NIH HHS S10 OD020056
6 · The paper itself

Abstract

The interplay between metabolism and chromatin signaling is implicated in cancer progression. However, whether and how metabolic reprogramming in tumors generates chromatin vulnerabilities remain unclear. Lung adenocarcinoma (LUAD) tumors frequently harbor aberrant activation of the NRF2 antioxidant pathway, which drives aggressive and chemo-resistant disease. Using a chromatin-focused CRISPR screen, we report that NRF2 activation sensitizes LUAD cells to genetic and chemical inhibition of class I histone deacetylases (HDACs). This association is observed across cultured cells, mouse models, and patient-derived xenografts. Integrative epigenomic, transcriptomic, and metabolomic analysis demonstrates that HDAC inhibition causes widespread redistribution of H4ac and its reader protein, which transcriptionally downregulates metabolic enzymes. This results in reduced flux into amino acid metabolism and de novo nucleotide synthesis pathways that are preferentially required for the survival of NRF2-active cancer cells. Together, our findings suggest NRF2 activation as a potential biomarker for effective repurposing of HDAC inhibitors to treat solid tumors.

Indexed as

NeoplasmsNF-E2-Related Factor 2AnimalsChromatinHistone Deacetylase InhibitorsHistone DeacetylasesHumansMetabolic ReprogrammingMiceChromatinHistone Deacetylase InhibitorsHistone DeacetylasesNFE2L2 protein, humanNF-E2-Related Factor 2cancer epigeneticscancer metabolismcancer targeted therapyCP: Cancerepigenetic reprogrammingHDAC inhibitorslung cancerNRF2 pathway

Identifiers

PMID38165806
PMCPMC10853943
OpenAlexW4390442389

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.