Evidence map›Paper›PMID 38163272›Full record

ArticleJournal of visualized experiments : JoVE2023

Sample Preparation for In Situ Cryotomography of Mammalian Cells.

Noah Weber, Brennan Hinks, Jacob Jensen, Thomas Lidahl, Luiza Mendonça

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Noah Weber *College of Liberal Arts, University of Minnesota; Department of Biochemistry, Molecular Biology and Biophysics, Medical School, University of Minnesota.
Brennan Hinks *Department of Biochemistry, Molecular Biology and Biophysics, Medical School, University of Minnesota; College of Biological Sciences, University of Minnesota.
Jacob JensenDepartment of Biochemistry, Molecular Biology and Biophysics, Medical School, University of Minnesota.
Thomas LidahlDepartment of Biochemistry, Molecular Biology and Biophysics, Medical School, University of Minnesota; College of Biological Sciences, University of Minnesota.
Luiza MendonçaDepartment of Biochemistry, Molecular Biology and Biophysics, Medical School, University of Minnesota; luiza@umn.edu.
University of Minnesota · USUniversity of Minnesota Medical Center · US

Funding

Structural Biology CoreU54AI170855 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Bruce Edward Torbett · 2022 to 2026
$36.7M
Project 3 - Dynamics of latent HIV-1 reservoirs: High resolution antigenic mapping and strategies to block reboundU54AI170752 · NIAID · DUKE UNIVERSITY · PI Maria Blasi · 2022 to 2026
$32.0M
NIAID NIH HHS U54 AI170752NIAID NIH HHS U54 AI170855
6 · The paper itself

Abstract

In situ cellular cryotomography is a powerful technique for studying complex objects in their native frozen-hydrated cellular context, making it highly relevant to cellular biology and virology. The potential of combining cryotomography with other microscopy modalities makes it a perfect technique for integrative and correlative imaging. However, sample preparation for in situ cellular tomography is not straightforward, as cells do not readily attach and stretch over the electron microscopy grid. Additionally, the grids themselves are fragile and can break if handled too forcefully, resulting in the loss of imageable areas. The geometry of tissue culture dishes can also pose a challenge when manipulating the grids with tweezers. Here, we describe the tips and tricks to overcome these (and other) challenges and prepare good-quality samples for in situ cellular cryotomography and correlative imaging of adherent mammalian cells. With continued advances in cryomicroscopy technology, this technique holds enormous promise for advancing our understanding of complex biological systems.

Indexed as

MicroscopyTomographyAnimalsCryoelectron MicroscopyElectron Microscope TomographyMammals

Identifiers

PMID38163272
PMCPMC10921979
OpenAlexW4389805287

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.