Evidence map›Paper›PMID 38161380›Full record

ReviewACS central science2023

Dataset Design for Building Models of Chemical Reactivity.

Priyanka Raghavan, Brittany C Haas, Madeline E Ruos, Jules Schleinitz, Abigail G Doyle, Sarah E Reisman, Matthew S Sigman, Connor W Coley

Abstract readReview
In one paragraph

Review in ACS central science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Transforming Molecular Synthesis With Large Language Models.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Considerations in Pursuing Reaction Scope Generality.Angewandte Chemie (International ed. in English) · 2025
    Review
  10. Review
  11. Generative Deep Learning for de Novo Drug Design─A Chemical Space Odyssey.Journal of chemical information and modeling · 2025
    Review
  12. Article
  13. Review
  14. Article
  15. Carbohydrate Synthesis is Entering the Data-Driven Digital Era.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
    Review
  16. Article
  17. Parametrization of κACS catalysis · 2025
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Priyanka RaghavanDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.
Brittany C HaasDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States.ORCID https://orcid.org/0000-0001-5344-4375
Madeline E RuosDepartment of Chemistry & Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States.ORCID https://orcid.org/0009-0007-6955-8642
Jules SchleinitzDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States.ORCID https://orcid.org/0000-0001-7116-4772
Abigail G DoyleDepartment of Chemistry & Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States.ORCID https://orcid.org/0000-0002-6641-0833
Sarah E ReismanDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States.ORCID https://orcid.org/0000-0001-8244-9300
Matthew S SigmanDepartment of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States.ORCID https://orcid.org/0000-0002-5746-8830
Connor W ColeyDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.ORCID https://orcid.org/0000-0002-8271-8723

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Models can codify our understanding of chemical reactivity and serve a useful purpose in the development of new synthetic processes via, for example, evaluating hypothetical reaction conditions or in silico substrate tolerance. Perhaps the most determining factor is the composition of the training data and whether it is sufficient to train a model that can make accurate predictions over the full domain of interest. Here, we discuss the design of reaction datasets in ways that are conducive to data-driven modeling, emphasizing the idea that training set diversity and model generalizability rely on the choice of molecular or reaction representation. We additionally discuss the experimental constraints associated with generating common types of chemistry datasets and how these considerations should influence dataset design and model building.

Identifiers

PMID38161380
PMCPMC10755851

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.