Evidence map›Paper›PMID 38157448›Full record

ArticleAngewandte Chemie (International ed. in English)2024

DNAzyme-Catalyzed Site-Specific N-Acylation of DNA Oligonucleotide Nucleobases.

Morgan M Kennebeck, Caroline K Kaminsky, Maria A Massa, Prakriti K Das, Robert D Boyd, Michelle Bishka, J Tomas Tricarico, Scott K Silverman

Open access · bronzeAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Alkyltransferase Ribozyme for Site-Specific NAngewandte Chemie (International ed. in English) · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Aptamer and DNAzyme Based Colorimetric Biosensors for Pathogen Detection.Angewandte Chemie (International ed. in English) · 2025
    Review
  8. Sequence-Dependent Acylation of Peptide Lysine Residues by DNAzymes.Chembiochem : a European journal of chemical biology · 2024
    Article
  9. DNA Catalysis: Design, Function, and Optimization.Molecules (Basel, Switzerland) · 2024
    Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Morgan M KennebeckDepartment of Chemistry, University of Illinois Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL-61801, USA.ORCID 0000-0001-7342-9631
Caroline K KaminskyDepartment of Chemistry, University of Illinois Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL-61801, USA.ORCID 0000-0001-8049-7499
Maria A MassaDepartment of Chemistry, University of Illinois Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL-61801, USA.ORCID 0000-0002-3483-7955
Prakriti K DasDepartment of Chemistry, University of Illinois Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL-61801, USA.ORCID 0000-0002-0396-4134
Robert D BoydDepartment of Chemistry, University of Illinois Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL-61801, USA.ORCID 0000-0003-1118-6296
Michelle BishkaDepartment of Chemistry, University of Illinois Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL-61801, USA.ORCID 0000-0002-5365-5145
J Tomas TricaricoDepartment of Chemistry, University of Illinois Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL-61801, USA.ORCID 0009-0005-0539-1543
Scott K SilvermanDepartment of Chemistry, University of Illinois Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL-61801, USA.ORCID 0000-0001-8166-3460
University of Illinois Urbana-Champaign · US

Funding

DNAzymes for Site-Specific DNA and RNA Nucleobase ModificationR01GM149566 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Scott K Silverman · 2023 to 2026
$1.2M
NIGMS NIH HHS R01 GM149566NIGMS NIH HHS R01GM149566
6 · The paper itself

Abstract

We used in vitro selection to identify DNAzymes that acylate the exocyclic nucleobase amines of cytidine, guanosine, and adenosine in DNA oligonucleotides. The acyl donor was the 2,3,5,6-tetrafluorophenyl ester (TFPE) of a 5'-carboxyl oligonucleotide. Yields are as high as >95 % in 6 h. Several of the N-acylation DNAzymes are catalytically active with RNA rather than DNA oligonucleotide substrates, and eight of nine DNAzymes for modifying C are site-specific (>95 %) for one particular substrate nucleotide. These findings expand the catalytic ability of DNA to include site-specific N-acylation of oligonucleotide nucleobases. Future efforts will investigate the DNA and RNA substrate sequence generality of DNAzymes for oligonucleotide nucleobase N-acylation, toward a universal approach for site-specific oligonucleotide modification.

Indexed as

DNA, CatalyticCatalysisDNAOligonucleotidesRNADNADNA, CatalyticOligonucleotidesRNADeoxyribozymesin Vitro SelectionNucleic AcidsOligonucleotidesRibozymes

Identifiers

PMID38157448
PMCPMC10873475
OpenAlexW4390400559

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.