Evidence map›Paper›PMID 38155930›Full record

ArticleNAR cancer2023

An impaired ubiquitin-proteasome system increases APOBEC3A abundance.

Margo Coxon, Madeline A Dennis, Alexandra Dananberg, Christopher D Collins, Hannah E Wilson, Jordyn Meekma, Marina I Savenkova, Daniel Ng, Chelsea A Osbron, Tony M Mertz and 4 more

Open access · goldAbstract read
In one paragraph

Article in NAR cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Margo CoxonSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Madeline A DennisSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Alexandra DananbergMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Christopher D CollinsSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Hannah E WilsonSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Jordyn MeekmaSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Marina I SavenkovaSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Daniel NgSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Chelsea A OsbronSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Tony M MertzSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Alan G GoodmanSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.
Sascha H DuttkeSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.ORCID https://orcid.org/0000-0003-4717-000X
John MaciejowskiMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Steven A RobertsSchool of Molecular Biosciences, Washington State University, Pullman, WA 99164-7520, USA.ORCID https://orcid.org/0000-0002-3628-5808
Washington State University · USMemorial Sloan Kettering Cancer Center · USUniversity of Vermont · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
TRAINING IN BIOTECHNOLOGY: EMPHASIS ON PROTEIN CHEMISTRYT32GM008336 · NIGMS · WASHINGTON STATE UNIVERSITY · PI CALL, DOUGLAS R. · 1989 to 2023
$8.9M
Exploiting a cyclic dinucleotide-mediated immune response to reduce the burden of Coxiella burnetii infectionR01AI139051 · NIAID · WASHINGTON STATE UNIVERSITY · PI GOODMAN, ALAN GABRIEL · 2019 to 2023
$2.4M
Mechanisms of genome instability induced by APOBEC Cytidine Deaminases & its impacts during cancer development - Diversity SupplementR01CA218112 · NCI · WASHINGTON STATE UNIVERSITY · PI ROBERTS, STEVEN A · 2017 to 2021
$2.2M
Regulation of APOBEC3 cytidine deaminase-induced mutation during cancerdevelopmentR01CA269784 · NCI · WASHINGTON STATE UNIVERSITY · PI STEVEN A ROBERTS · 2023 to 2026
$2.0M
Exploiting Natural Genetic and Organismic Variation to Identify the DNA Motifs Regulating TranscriptionR00GM135515 · NIGMS · WASHINGTON STATE UNIVERSITY · PI DUTTKE, SASCHA H. · 2022 to 2024
$747k
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA218112NCI NIH HHS R01 CA269784NIAID NIH HHS R01 AI139051NIGMS NIH HHS R00 GM135515NIGMS NIH HHS T32 GM008336NIH HHS S10 OD026929
6 · The paper itself

Abstract

Apolipoprotein B messenger RNA (mRNA) editing enzyme, catalytic polypeptide-like (APOBEC) cytidine deaminases cause genetic instability during cancer development. Elevated APOBEC3A (A3A) levels result in APOBEC signature mutations; however, mechanisms regulating A3A abundance in breast cancer are unknown. Here, we show that dysregulating the ubiquitin-proteasome system with proteasome inhibitors, including Food and Drug Administration-approved anticancer drugs, increased A3A abundance in breast cancer and multiple myeloma cell lines. Unexpectedly, elevated A3A occurs via an ∼100-fold increase in A3A mRNA levels, indicating that proteasome inhibition triggers a transcriptional response as opposed to or in addition to blocking A3A degradation. This transcriptional regulation is mediated in part through FBXO22, a protein that functions in SKP1-cullin-F-box ubiquitin ligase complexes and becomes dysregulated during carcinogenesis. Proteasome inhibitors increased cellular cytidine deaminase activity, decreased cellular proliferation and increased genomic DNA damage in an A3A-dependent manner. Our findings suggest that proteasome dysfunction, either acquired during cancer development or induced therapeutically, could increase A3A-induced genetic heterogeneity and thereby influence therapeutic responses in patients.

Identifiers

PMID38155930
PMCPMC10753533
OpenAlexW4390025370

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.