Evidence map›Paper›PMID 38155235›Full record

ArticleScientific reports2023

Identification of neutrophil extracellular traps and crosstalk genes linking inflammatory bowel disease and osteoporosis by integrated bioinformatics analysis and machine learning.

Gang Xu, Wanhao Zhang, Jun Yang, Na Sun, Xiaochen Qu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Gang XuDepartment of Orthopaedics, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning Province, China. xugang@dmu.edu.cn.
Wanhao ZhangDepartment of Orthopaedics, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning Province, China.
Jun YangDepartment of Orthopaedics, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning Province, China.
Na SunDepartment of Pharmacy, The Third People's Hospital of Dalian, Dalian, Liaoning Province, China.
Xiaochen QuDepartment of Orthopaedics, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning Province, China. xiaochen13@hotmail.com.
Dalian Medical University · CNFirst Affiliated Hospital of Dalian Medical University · CNThe Third People's Hospital of Dalian City · CN

Funding

Dalian Medical Science Research Plan 21Z11010National Natural Science Foundation of China 82002326National Natural Science Foundation of China 82204820the Teaching Reform Research Project of Dalian Medical University DYLX22025
6 · The paper itself

Abstract

Musculoskeletal deficits are among the most common extra-intestinal manifestations and complications of inflammatory bowel disease (IBD). This study aimed to identify crosstalk genes between IBD and osteoporosis (OP) and potential relationships between crosstalk and neutrophil extracellular traps (NETs)-related genes. Three common hub genes from different compared groups are actually the same, namely HDAC6, IL-8, and PPIF. ROC showed that the combined diagnostic value of HDAC6, IL-8, and PPIF was higher than each of the three key hub genes. Immune infiltration results showed that HDAC6 and IL-8 key genes negatively correlated with CD65 bright natural killer cells. USF1 was the common upstream TFs between HDAC6 and PPIF, and MYC was the common upstream TFs between IL-8 and PPIF in RegNetwork. Taken together, this study shows a linked mechanism between IBD and OP via NETs and crosstalk genes. These findings may show light on better diagnosis and treatment of IBD complicated with OP.

Indexed as

Extracellular TrapsInflammatory Bowel DiseasesOsteoporosisComputational BiologyHumansInterleukin-8Machine LearningInterleukin-8

Identifiers

PMID38155235
PMCPMC10754907
OpenAlexW4390339628

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.