Evidence map›Paper›PMID 38153618›Full record

ArticleAntonie van Leeuwenhoek2023

Revealing viral diversity in the Napahai plateau wetland based on metagenomics.

Lingling Xiong, Yanmei Li, Kun Zeng, Yunlin Wei, Haiyan Li, Xiuling Ji

Abstract read
PubMed Publisher
In one paragraph

Article in Antonie van Leeuwenhoek, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Pathogen-Phage Geomapping to Overcome Resistance.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lingling XiongFaculty of Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Yanmei LiFaculty of Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Kun ZengFaculty of Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Yunlin WeiFaculty of Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China.
Haiyan LiMedical School, Kunming University of Science and Technology, Kunming, 650500, China. lhy@163.com.
Xiuling JiFaculty of Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China. jixiuling1023@126.com.
Kunming University of Science and Technology · CN

Funding

National Natural Science Foundation of China 32160294, 42267059
6 · The paper itself

Abstract

We focused on exploring the diversity of viruses in the Napahai plateau wetland, a unique ecosystem located in Yunnan, China. While viruses in marine environments have been extensively studied for their influence on microbial metabolism and biogeochemical cycles, little is known about their composition and function in plateau wetlands. Metagenomic analysis was employed to investigate the viral diversity and biogeochemical impacts in the Napahai wetland. It revealed that the Caudoviricetes and Malgrandaviricetes class level was the most abundant viral category based on phylogenetic analysis. Additionally, a gene-sharing network highlighted the presence of numerous unexplored viruses and demonstrated their unique characteristics and significant variation within the viral community of the Napahai wetland. Furthermore, the study identified the auxiliary metabolic genes (AMGs). AMGs provide phages with additional functions, such as protection against host degradation and involvement in metabolic pathways, such as the pentose phosphate pathway and DNA biosynthesis. The viruses in the Napahai wetland were found to influence carbon, nitrogen, sulfur, and amino acid metabolism, indirectly contributing to biogeochemical cycling through these AMGs. Overall, the research sheds light on the diverse and unique viral communities in the Napahai plateau wetland and emphasizes the significant roles of viruses in microbial ecology. The findings contribute to a deeper understanding of the characteristics and ecological functions of viral communities in plateau wetland ecosystems.

Indexed as

BacteriophagesWetlandsChinaEcosystemPhylogenyAuxiliary metabolic genesMetagenomesNapahai plateau wetlandTerLVirus

Identifiers

PMID38153618
OpenAlexW4390346399

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.