Evidence map›Paper›PMID 38153395›Full record

ArticleThe Journal of general physiology2024

Mechanism of hydrophobic gating in the acetylcholine receptor channel pore.

Monika Kumari, Nadira Khatoon, Rachita Sharma, Sushanth Adusumilli, Anthony Auerbach, Hemant K Kashyap, Tapan K Nayak

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Φ value analysis underscores strong functional and structural compactness of the GABAProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Monika KumariDepartment of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India.ORCID 0000-0003-0398-1169
Nadira KhatoonKusuma School of Biological Sciences, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India.ORCID 0009-0003-1737-3292
Rachita SharmaKusuma School of Biological Sciences, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India.ORCID 0009-0008-4329-2193
Sushanth AdusumilliKusuma School of Biological Sciences, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India.ORCID 0009-0003-4868-8596
Anthony AuerbachJacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.ORCID 0000-0003-0921-4358
Hemant K KashyapDepartment of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India.ORCID 0000-0001-9124-2918
Tapan K NayakKusuma School of Biological Sciences, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India.ORCID 0000-0002-3054-5867
Indian Institute of Technology Delhi · INUniversity at Buffalo, State University of New York · US

Funding

Science and Engineering Research Board SRG/2019/001518
6 · The paper itself

Abstract

Neuromuscular acetylcholine receptors (AChRs) are hetero-pentameric, ligand-gated ion channels. The binding of the neurotransmitter acetylcholine (ACh) to two target sites promotes a global conformational change of the receptor that opens the channel and allows ion conduction through the channel pore. Here, by measuring free-energy changes from single-channel current recordings and using molecular dynamics simulations, we elucidate how a constricted hydrophobic region acts as a "gate" to regulate the channel opening in the pore of AChRs. Mutations of gate residues, including those implicated in congenital myasthenia syndrome, lower the permeation barrier of the channel substantially and increase the unliganded gating equilibrium constant (constitutive channel openings). Correlations between hydrophobicity and the observed free-energy changes, supported by calculations of water densities in the wild-type versus mutant channel pores, provide evidence for hydrophobic wetting-dewetting transition at the gate. The analysis of a coupled interaction network provides insight into the molecular mechanism of closed- versus open-state conformational changes at the gate. Studies of the transition state by "phi"(φ)-value analysis indicate that agonist binding serves to stabilize both the transition and the open state. Intersubunit interaction energy measurements and molecular dynamics simulations suggest that channel opening involves tilting of the pore-lining M2 helices, asymmetric outward rotation of amino acid side chains, and wetting transition of the gate region that lowers the barrier to ion permeation and stabilizes the channel open conformation. Our work provides new insight into the hydrophobic gate opening and shows why the gate mutations result in constitutive AChR channel activity.

Indexed as

AcetylcholineReceptors, CholinergicAmino AcidsHydrophobic and Hydrophilic InteractionsMolecular Dynamics SimulationAcetylcholineAmino AcidsReceptors, Cholinergic

Identifiers

PMID38153395
PMCPMC10757554
OpenAlexW4390344683

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.