Evidence map›Paper›PMID 38152577›Full record

ArticleOpen life sciences2023

From slides to insights: Harnessing deep learning for prognostic survival prediction in human colorectal cancer histology.

Jyoti Verma, Archana Sandhu, Renu Popli, Rajeev Kumar, Vikas Khullar, Isha Kansal, Ashutosh Sharma, Kanwal Garg, Neeru Kashyap, Khursheed Aurangzeb

Open access · goldAbstract read
In one paragraph

Article in Open life sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Jyoti VermaDepartment of Computer Science and Engineering, Punjabi University, Patiala, India.
Archana SandhuMM Institute of Computer Technology and Business Management Maharishi Markandeshwar (Deemed to be University) Mullana-Ambala, Haryana, 134007, India.
Renu PopliChitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India.
Rajeev KumarChitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India.
Vikas KhullarChitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India.
Isha KansalChitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India.
Ashutosh SharmaDepartment of Informatics, School of Computer Science, University of Petroleum and Energy Studies, Dehradun 248007, Uttarakhand, India.
Kanwal GargDepartment of Computer Science and Applications, Kurukshetra University, Kurukshetra, 136119, Haryana, India.
Neeru KashyapDepartment of ECE, M.M. Engineering College, Maharishi Markandeshwar (Deemed to be University), Mullana, Ambala, Ambala, Haryana 134007, India.
Khursheed AurangzebDepartment of Computer Engineering, College of Computer and Information Sciences, King Saud University, P.O. Box 51178, Riyadh 11543, Saudi Arabia.
Chitkara University · INMaharishi Markandeshwar University, Mullana · INKing Saud University · SAKurukshetra University · INPunjabi University · INUniversity of Petroleum and Energy Studies · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prognostic survival prediction in colorectal cancer (CRC) plays a crucial role in guiding treatment decisions and improving patient outcomes. In this research, we explore the application of deep learning techniques to predict survival outcomes based on histopathological images of human colorectal cancer. We present a retrospective multicenter study utilizing a dataset of 100,000 nonoverlapping image patches from hematoxylin & eosin-stained histological images of CRC and normal tissue. The dataset includes diverse tissue classes such as adipose, background, debris, lymphocytes, mucus, smooth muscle, normal colon mucosa, cancer-associated stroma, and colorectal adenocarcinoma epithelium. To perform survival prediction, we employ various deep learning architectures, including convolutional neural network, DenseNet201, InceptionResNetV2, VGG16, VGG19, and Xception. These architectures are trained on the dataset using a multicenter retrospective analysis approach. Extensive preprocessing steps are undertaken, including image normalization using Macenko's method and data augmentation techniques, to optimize model performance. The experimental findings reveal promising results, demonstrating the effectiveness of deep learning models in prognostic survival prediction. Our models achieve high accuracy, precision, recall, and validation metrics, showcasing their ability to capture relevant histological patterns associated with prognosis. Visualization techniques are employed to interpret the models' decision-making process, highlighting important features and regions contributing to survival predictions. The implications of this research are manifold. The accurate prediction of survival outcomes in CRC can aid in personalized medicine and clinical decision-making, facilitating tailored treatment plans for individual patients. The identification of important histological features and biomarkers provides valuable insights into disease mechanisms and may lead to the discovery of novel prognostic indicators. The transparency and explainability of the models enhance trust and acceptance, fostering their integration into clinical practice. Research demonstrates the potential of deep learning models for prognostic survival prediction in human colorectal cancer histology. The findings contribute to the understanding of disease progression and offer practical applications in personalized medicine. By harnessing the power of deep learning and histopathological analysis, we pave the way for improved patient care, clinical decision support, and advancements in prognostic prediction in CRC.

Indexed as

colorectal cancerdeep learninghematoxylin & eosin staininghistopathological analysisimage patchesprognostic survival predictionretrospective multicenter study

Identifiers

PMID38152577
PMCPMC10751997
OpenAlexW4389672033

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.