Evidence map›Paper›PMID 38152042›Full record

ArticleJMIR formative research2024

A Deep Learning-Based Approach for Prediction of Vancomycin Treatment Monitoring: Retrospective Study Among Patients With Critical Illness.

Dohyun Kim, Hyun-Soo Choi, DongHoon Lee, Minkyu Kim, Yoon Kim, Seon-Sook Han, Yeonjeong Heo, Ju-Hee Park, Jinkyeong Park

Open access · goldAbstract read
In one paragraph

Article in JMIR formative research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. DeepTDM: Deep Learning-Based Prediction of Sequential Therapeutic Drug Monitoring Levels of Vancomycin.IEEE journal of translational engineering in health and medicine · 2025
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Dohyun Kim *Department of Research and Development, ZIOVISION Co, Ltd, Chuncheon, Republic of Korea.ORCID https://orcid.org/0009-0004-2626-0510
Hyun-Soo Choi *Department of Research and Development, ZIOVISION Co, Ltd, Chuncheon, Republic of Korea.ORCID https://orcid.org/0000-0002-3594-8948
DongHoon LeeDepartment of Research and Development, ZIOVISION Co, Ltd, Chuncheon, Republic of Korea.ORCID https://orcid.org/0000-0003-2101-9627
Minkyu KimDepartment of Research and Development, ZIOVISION Co, Ltd, Chuncheon, Republic of Korea.ORCID https://orcid.org/0000-0003-1122-5363
Yoon KimDepartment of Research and Development, ZIOVISION Co, Ltd, Chuncheon, Republic of Korea.ORCID https://orcid.org/0000-0001-5709-5766
Seon-Sook HanDepartment of Internal Medicine, Kangwon National University, Chuncheon, Republic of Korea.ORCID https://orcid.org/0000-0002-1320-4163
Yeonjeong HeoDepartment of Internal Medicine, Kangwon National University, Chuncheon, Republic of Korea.ORCID https://orcid.org/0000-0002-8151-7970
Ju-Hee ParkDepartment of Internal Medicine, Dongguk University Ilsan Hospital, Goyang, Republic of Korea.ORCID https://orcid.org/0000-0002-0932-121X
Jinkyeong ParkDepartment of Pulmonary, Allergy and Critical Care Medicine, School of Medicine, Kyung Hee University Hospital at Gangdong, Seoul, Republic of Korea.ORCID https://orcid.org/0000-0002-8833-9062
Kangwon National University · KRSTR Biotech (South Korea) · KRDongguk University Ilsan Hospital · KRSeoul National University of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVancomycin pharmacokinetics are highly variable in patients with critical illnesses, and clinicians commonly use population pharmacokinetic (PPK) models based on a Bayesian approach to dose. However, these models are population-dependent, may only sometimes meet the needs of individual patients, and are only used by experienced clinicians as a reference for making treatment decisions. To assist real-world clinicians, we developed a deep learning-based decision-making system that predicts vancomycin therapeutic drug monitoring (TDM) levels in patients in intensive care unit.

objectiveThis study aimed to establish joint multilayer perceptron (JointMLP), a new deep-learning model for predicting vancomycin TDM levels, and compare its performance with the PPK models, extreme gradient boosting (XGBoost), and TabNet.

methodsWe used a 977-case data set split into training and testing groups in a 9:1 ratio. We performed external validation of the model using 1429 cases from Kangwon National University Hospital and 2394 cases from the Medical Information Mart for Intensive Care-IV (MIMIC-IV). In addition, we performed 10-fold cross-validation on the internal training data set and calculated the 95% CIs using the metric. Finally, we evaluated the generalization ability of the JointMLP model using the MIMIC-IV data set.

resultsOur JointMLP model outperformed other models in predicting vancomycin TDM levels in internal and external data sets. Compared to PPK, the JointMLP model improved predictive power by up to 31% (mean absolute error [MAE] 6.68 vs 5.11) on the internal data set and 81% (MAE 11.87 vs 6.56) on the external data set. In addition, the JointMLP model significantly outperforms XGBoost and TabNet, with a 13% (MAE 5.75 vs 5.11) and 14% (MAE 5.85 vs 5.11) improvement in predictive accuracy on the inner data set, respectively. On both the internal and external data sets, our JointMLP model performed well compared to XGBoost and TabNet, achieving prediction accuracy improvements of 34% and 14%, respectively. Additionally, our JointMLP model showed higher robustness to outlier data than the other models, as evidenced by its higher root mean squared error performance across all data sets. The mean errors and variances of the JointMLP model were close to zero and smaller than those of the PPK model in internal and external data sets.

conclusionsOur JointMLP approach can help optimize treatment outcomes in patients with critical illnesses in an intensive care unit setting, reducing side effects associated with suboptimal vancomycin administration. These include increased risk of bacterial resistance, extended hospital stays, and increased health care costs. In addition, the superior performance of our model compared to existing models highlights its potential to help real-world clinicians.

Indexed as

critically illdeep learninginflammationmachine learningpharmacokinetictherapeutic drug monitoringvancomycin

Identifiers

PMID38152042
PMCPMC10960205
OpenAlexW4390285658

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.