Evidence map›Paper›PMID 38150428›Full record

ArticlePloS one2023

The evolutionary loss of the Eh1 motif in FoxE1 in the lineage of placental mammals.

Mahak Sharma, Victoria M Larow, Nataliia Dobychina, Daniel S Kessler, Maria M Krasilnikova, Sergey Yaklichkin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 67% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mahak SharmaDepartment of Biochemistry and Molecular Biology, Penn State University, University Park, Pennsylvania, United States of America.
Victoria M LarowDepartment of Biochemistry and Molecular Biology, Penn State University, University Park, Pennsylvania, United States of America.
Nataliia DobychinaCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Daniel S KesslerDepartment of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Maria M KrasilnikovaDepartment of Biochemistry and Molecular Biology, Penn State University, University Park, Pennsylvania, United States of America.ORCID 0009-0008-9650-7151
Sergey YaklichkinCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Pennsylvania State University · USMemorial Sloan Kettering Cancer Center · USUniversity of Pennsylvania · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Mesoderm Formation and the Role of Repression by FoxD3R01GM064768 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KESSLER, DANIEL S · 2002 to 2010
$2.6M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM064768
6 · The paper itself

Abstract

Forkhead box E1 (FoxE1) protein is a transcriptional regulator known to play a major role in the development of the thyroid gland. By performing sequence alignments, we detected a deletion in FoxE1, which occurred in the evolution of mammals, near the point of divergence of placental mammals. This deletion led to the loss of the majority of the Eh1 motif, which was important for interactions with transcriptional corepressors. To investigate a potential mechanism for this deletion, we analyzed replication through the deletion area in mammalian cells with two-dimensional gel electrophoresis, and in vitro, using a primer extension reaction. We demonstrated that the area of the deletion presented an obstacle for replication in both assays. The exact position of polymerization arrest in primer extension indicated that it was most likely caused by a quadruplex DNA structure. The quadruplex structure hypothesis is also consistent with the exact borders of the deletion. The exact roles of these evolutionary changes in FoxE1 family proteins are still to be determined.

Indexed as

EutheriaPlacentaAnimalsFemaleForkhead Transcription FactorsPregnancySequence AlignmentThyroid GlandForkhead Transcription Factors

Identifiers

PMID38150428
PMCPMC10752562
OpenAlexW4390264572

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.