Evidence map›Paper›PMID 38149248›Full record

ArticleFrontiers in immunology2023

Single-cell RNA-seq analyses inform necroptosis-associated myeloid lineages influence the immune landscape of pancreas cancer.

Weiwei Dong, Huixia Zhao, Shanshan Xiao, Liuqing Zheng, Tongqiang Fan, Li Wang, He Zhang, Yanyan Hu, Jingwen Yang, Tao Wang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Weiwei Dong *Senior Dept of Oncology, The Fifth Medical Center of People's Liberation Army (PLA) General Hospital, Beijing, China.
Huixia Zhao *Dept of Oncology, The Forth Medical Center of People's Liberation Army (PLA) General Hospital, Beijing, China.
Shanshan XiaoDepartment of Research and Development (R&D), Hangzhou Repugene Technology Co., Ltd., Hangzhou, China.
Liuqing ZhengDepartment of Research and Development (R&D), Hangzhou Repugene Technology Co., Ltd., Hangzhou, China.
Tongqiang FanDepartment of Research and Development (R&D), Hangzhou Repugene Technology Co., Ltd., Hangzhou, China.
Li WangDepartment of Research and Development (R&D), Hangzhou Repugene Technology Co., Ltd., Hangzhou, China.
He ZhangDept of Oncology, The Forth Medical Center of People's Liberation Army (PLA) General Hospital, Beijing, China.
Yanyan HuSenior Dept of Oncology, The Fifth Medical Center of People's Liberation Army (PLA) General Hospital, Beijing, China.
Jingwen YangSenior Dept of Oncology, The Fifth Medical Center of People's Liberation Army (PLA) General Hospital, Beijing, China.
Tao WangDepartment of Research and Development (R&D), Hangzhou Repugene Technology Co., Ltd., Hangzhou, China.
Wenhua XiaoSenior Dept of Oncology, The Fifth Medical Center of People's Liberation Army (PLA) General Hospital, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Tumor-infiltrating myeloid cells (TIMs) are key regulators in tumor progression, but the similarity and distinction of their fundamental properties in pancreatic ductal adenocarcinoma (PDAC) remain elusive. Method: In this study, we conducted scRNA-seq data analysis of cells from 12 primary tumor (PT) tissues, 4 metastatic (Met) tumor tissues, 3 adjacent normal pancreas tissues (Para), and PBMC samples across 16 PDAC patients, and revealed a heterogeneous TIMs environment in PDAC. Result: Systematic comparisons between tumor and non-tumor samples of myeloid lineages identified 10 necroptosis-associated genes upregulated in PDAC tumors compared to 5 upregulated in paratumor or healthy peripheral blood. A novel RTM (resident tissue macrophages), GLUL-SQSTM1- RTM, was found to act as a positive regulator of immunity. Additionally, HSP90AA1+HSP90AB1+ mast cells exhibited pro-immune characteristics, and JAK3+TLR4+ CD16 monocytes were found to be anti-immune. The findings were validated through clinical outcomes and cytokines analyses. Lastly, intercellular network reconstruction supported the associations between the identified novel clusters, cancer cells, and immune cell populations. Conclusion: Our analysis comprehensively characterized major myeloid cell lineages and identified three subsets of myeloid-derived cells associated with necroptosis. These findings not only provide a valuable resource for understanding the multi-dimensional characterization of the tumor microenvironment in PDAC but also offer valuable mechanistic insights that can guide the design of effective immuno-oncology treatment strategies.

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsCell LineageHumansLeukocytes, MononuclearNecroptosisSingle-Cell Gene Expression AnalysisTumor MicroenvironmentnecroptosisPDACscRNA-seqTIMsTME

Identifiers

PMID38149248
PMCPMC10749962
OpenAlexW4389620824

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.