Evidence map›Paper›PMID 38147205›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Induction of Translational Readthrough on Protein Tyrosine Phosphatases Targeted by Premature Termination Codon Mutations in Human Disease.

Leire Torices, Caroline E Nunes-Xavier, Janire Mingo, Sandra Luna, Asier Erramuzpe, Jesús M Cortés, Rafael Pulido

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Leire ToricesBiobizkaia Health Research Institute, Barakaldo, Spain.
Caroline E Nunes-XavierBiobizkaia Health Research Institute, Barakaldo, Spain.
Janire MingoBiobizkaia Health Research Institute, Barakaldo, Spain.
Sandra LunaBiobizkaia Health Research Institute, Barakaldo, Spain.
Asier ErramuzpeBiobizkaia Health Research Institute, Barakaldo, Spain.
Jesús M CortésBiobizkaia Health Research Institute, Barakaldo, Spain.
Rafael PulidoBiobizkaia Health Research Institute, Barakaldo, Spain. rafael.pulidomurillo@bio-bizkaia.eus.
BioCruces Health research Institute · ESIkerbasque · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonsense mutations generating premature termination codons (PTCs) in various genes are frequently associated with somatic cancer and hereditary human diseases since PTCs commonly generate truncated proteins with defective or altered function. Induced translational readthrough during protein biosynthesis facilitates the incorporation of an amino acid at the position of a PTC, allowing the synthesis of a complete protein. This may evade the pathological effect of the PTC mutation and provide new therapeutic opportunities. Several protein tyrosine phosphatases (PTPs) genes are targeted by PTC in human disease, the tumor suppressor PTEN being the more prominent paradigm. Here, using PTEN and laforin as examples, two PTPs from the dual-specificity phosphatase subfamily, we describe methodologies to analyze in silico the distribution and frequency of pathogenic PTC in PTP genes. We also summarize laboratory protocols and technical notes to study the induced translational readthrough reconstitution of the synthesis of PTP targeted by PTC in association with disease in cellular models.

Indexed as

Codon, NonsenseProtein Tyrosine PhosphatasesDual-Specificity PhosphatasesHumansMutationProtein BiosynthesisCodon, NonsenseDual-Specificity PhosphatasesProtein Tyrosine PhosphatasesLaforinNonsense mutationPremature termination codonProtein translationPTENTranslational readthrough

Identifiers

PMID38147205
OpenAlexW4390233282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.