Evidence map›Paper›PMID 38146001›Full record

ArticleGenes and immunity2024

Innate IRE1α-XBP1 activation by viral single-stranded RNA and its influence on lung cytokine production during SARS-CoV-2 pneumonia.

José J Fernández, Cristina Mancebo, Sonsoles Garcinuño, Gabriel March, Yolanda Alvarez, Sara Alonso, Luis Inglada, Jesús Blanco, Antonio Orduña, Olimpio Montero and 5 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Genes and immunity, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

José J FernándezUnidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003, Valladolid, Spain.ORCID 0000-0001-7552-0076
Cristina ManceboUnidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003, Valladolid, Spain.ORCID 0000-0002-0175-1493
Sonsoles GarcinuñoServicio de Microbiología, Hospital Clínico Universitario de Valladolid, Universidad de Valladolid, 47003, Valladolid, Spain.ORCID 0000-0001-8108-0839
Gabriel MarchServicio de Microbiología, Hospital Clínico Universitario de Valladolid, Universidad de Valladolid, 47003, Valladolid, Spain.
Yolanda AlvarezUnidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003, Valladolid, Spain.ORCID 0000-0002-4851-8277
Sara AlonsoUnidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003, Valladolid, Spain.
Luis IngladaServicio de Medicina Interna, Hospital Universitario Rio-Hortega, 47012, Valladolid, Spain.
Jesús BlancoServicio de Medicina Intensiva, Hospital Universitario Rio-Hortega, 47012, Valladolid, Spain.
Antonio OrduñaServicio de Microbiología, Hospital Clínico Universitario de Valladolid, Universidad de Valladolid, 47003, Valladolid, Spain.
Olimpio MonteroUnidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003, Valladolid, Spain.
Tito A SandovalWeill Cornell Graduate School of Medical Sciences, Cornell University, New York, NY, 10065, USA.ORCID 0000-0003-2705-5282
Juan R Cubillos-RuizWeill Cornell Graduate School of Medical Sciences, Cornell University, New York, NY, 10065, USA.
Elena Bustamante-MunguiraServicio de Medicina Intensiva, Hospital Clínico Universitario de Valladolid, 47003, Valladolid, Spain.
Nieves Fernández *Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003, Valladolid, Spain.ORCID 0000-0002-9141-3956
Mariano Sánchez Crespo *Unidad de Excelencia Instituto de Biomedicina y Genética Molecular, CSIC-Universidad de Valladolid, 47003, Valladolid, Spain. sanchezcrespomariano@gmail.com.ORCID 0000-0002-6149-154X
Universidad de Valladolid · ESCornell University · USHospital Clínico Universitario de Valladolid · ESHospital Universitario Río Hortega · ESInstituto de Salud Carlos III · ES

Funding

Consejería de Educación, Junta de Castilla y León (Consejería de Educación de la Junta de Castilla y León) VA175P20Ministerio de Ciencia y Tecnología, Gobierno de la Provincia de Córdoba (Ministry of Science and Technology, Government of the Province of Cordoba) PID2020-113751RB-I00Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) PID2020-113751RB-I00Ministerio de Economía y Competitividad (Ministry of Economy and Competitiveness) SAF2017-83079-R
6 · The paper itself

Abstract

The utilization of host-cell machinery during SARS-CoV-2 infection can overwhelm the protein-folding capacity of the endoplasmic reticulum and activate the unfolded protein response (UPR). The IRE1α-XBP1 arm of the UPR could also be activated by viral RNA via Toll-like receptors. Based on these premises, a study to gain insight into the pathogenesis of COVID-19 disease was conducted using nasopharyngeal exudates and bronchioloalveolar aspirates. The presence of the mRNA of spliced XBP1 and a high expression of cytokine mRNAs were observed during active infection. TLR8 mRNA showed an overwhelming expression in comparison with TLR7 mRNA in bronchioloalveolar aspirates of COVID-19 patients, thus suggesting the presence of monocytes and monocyte-derived dendritic cells (MDDCs). In vitro experiments in MDDCs activated with ssRNA40, a synthetic mimic of SARS-CoV-2 RNA, showed induction of XBP1 splicing and the expression of proinflammatory cytokines. These responses were blunted by the IRE1α inhibitor MKC8866, the TLR8 antagonist CU-CPT9a, and knockdown of TLR8 receptor. In contrast, the IRE1α-XBP1 activator IXA4 enhanced these responses. Based on these findings, the TLR8/IRE1α system seems to play a significant role in the induction of the proinflammatory cytokines associated with severe COVID-19 disease and might be a druggable target to control cytokine storm.

Indexed as

COVID-19EndoribonucleasesCytokinesHumansLungProtein Serine-Threonine KinasesRNA, MessengerRNA, ViralSARS-CoV-2Toll-Like Receptor 8X-Box Binding Protein 1CytokinesEndoribonucleasesERN1 protein, humanProtein Serine-Threonine KinasesRNA, MessengerRNA, ViralToll-Like Receptor 8X-Box Binding Protein 1XBP1 protein, human

Identifiers

PMID38146001
OpenAlexW4390194408

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.