Evidence map›Paper›PMID 38140694›Full record

ArticleViruses2023

Emergence of Intergenogroup Reassortant G9P[4] Strains Following Rotavirus Vaccine Introduction in Ghana.

Yen Hai Doan, Francis Ekow Dennis, Nobuhiro Takemae, Kei Haga, Hiroyuki Shimizu, Michael Gyasi Appiah, Belinda Larteley Lartey, Susan Afua Damanka, Takaya Hayashi, Toshihiko Suzuki and 3 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Phylogenetic Analyses ofMicroorganisms · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. 14 years of rotavirus A surveillance: unusual dominance of equine-like G3P[8] genotype with DS-1-like genotype constellation after the pandemic, Belgium, 2009 to 2023.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Yen Hai DoanCenter for Emergency Preparedness and Response, National Institute of Infectious Diseases, Tokyo 208-0011, Japan.ORCID 0000-0002-6782-3541
Francis Ekow DennisDepartment of Electron Microscopy and Histopathology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra P.O. Box LG 581, Ghana.ORCID 0000-0003-2078-6955
Nobuhiro TakemaeCenter for Emergency Preparedness and Response, National Institute of Infectious Diseases, Tokyo 208-0011, Japan.ORCID 0000-0001-5152-8938
Kei HagaLaboratory of Viral Infection, Department of Infection Control and Immunology, Ōmura Satoshi Memorial Institute & Graduate School of Infection Control Sciences, Kitasato University, Tokyo 108-8641, Japan.ORCID 0000-0002-8524-1078
Hiroyuki ShimizuDepartment of Virology II, National Institute of Infectious Diseases, Tokyo 208-0011, Japan.ORCID 0000-0002-2987-2377
Michael Gyasi AppiahDepartment of Electron Microscopy and Histopathology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra P.O. Box LG 581, Ghana.
Belinda Larteley LarteyDepartment of Electron Microscopy and Histopathology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra P.O. Box LG 581, Ghana.ORCID 0000-0003-4976-6739
Susan Afua DamankaDepartment of Electron Microscopy and Histopathology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra P.O. Box LG 581, Ghana.
Takaya HayashiDepartment of Molecular Virology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo 113-8549, Japan.
Toshihiko SuzukiDepartment of Bacterial Pathogenesis, Infection and Host Response, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo 113-8549, Japan.
Tsutomu KageyamaCenter for Emergency Preparedness and Response, National Institute of Infectious Diseases, Tokyo 208-0011, Japan.
George Enyimah ArmahDepartment of Electron Microscopy and Histopathology, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra P.O. Box LG 581, Ghana.
Kazuhiko KatayamaLaboratory of Viral Infection, Department of Infection Control and Immunology, Ōmura Satoshi Memorial Institute & Graduate School of Infection Control Sciences, Kitasato University, Tokyo 108-8641, Japan.ORCID 0000-0002-7692-1151
University of Ghana · GHNational Institute of Infectious Diseases · JPKitasato University · JPTokyo Medical and Dental University · JP

Funding

Japan Agency for Medical Research and Development 22wm0125007, 23wm0125007, and 23fk0108667
6 · The paper itself

Abstract

Rotavirus (RVA) is a leading cause of childhood gastroenteritis. RVA vaccines have reduced the global disease burden; however, the emergence of intergenogroup reassortant strains is a growing concern. During surveillance in Ghana, we observed the emergence of G9P[4] RVA strains in the fourth year after RVA vaccine introduction. To investigate whether Ghanaian G9P[4] strains also exhibited the DS-1-like backbone, as seen in reassortant G1/G3/G8/G9 strains found in other countries in recent years, this study determined the whole genome sequences of fifteen G9P[4] and two G2P[4] RVA strains detected during 2015-2016. The results reveal that the Ghanaian G9P[4] strains exhibited a double-reassortant genotype, with G9-VP7 and E6-NSP4 genes on a DS-1-like backbone (G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E6-H2). Although they shared a common ancestor with G9P[4] DS-1-like strains from other countries, further intra-reassortment events were observed among the original G9P[4] and co-circulating strains in Ghana. In the post-vaccine era, there were significant changes in the distribution of RVA genotype constellations, with unique strains emerging, indicating an impact beyond natural cyclical fluctuations. However, reassortant strains may exhibit instability and have a limited duration of appearance. Current vaccines have shown efficacy against DS-1-like strains; however, ongoing surveillance in fully vaccinated children is crucial for addressing concerns about long-term effectiveness.

Indexed as

RotavirusRotavirus InfectionsRotavirus VaccinesChildGenome, ViralGenotypeGhanaHumansPhylogenyReassortant VirusesRotavirus VaccinesDS-1-likeevolutionG9P[4] strainnext generation sequencingreassortmentrotavirus A

Identifiers

PMID38140694
PMCPMC10747750
OpenAlexW4389912861

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.