Evidence map›Paper›PMID 38140669›Full record

ArticleViruses2023

Molecular Characterization of Porcine Epidemic Diarrhea Virus from Field Samples in South Korea.

Bac Tran Le, Hansani Chathurika Gallage, Min-Hui Kim, Jung-Eun Park

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Bac Tran LeCollege of Veterinary Medicine, Chungnam National University, Daejeon 34134, Republic of Korea.
Hansani Chathurika GallageCollege of Veterinary Medicine, Chungnam National University, Daejeon 34134, Republic of Korea.ORCID 0009-0003-4456-4705
Min-Hui KimCollege of Veterinary Medicine, Chungnam National University, Daejeon 34134, Republic of Korea.
Jung-Eun ParkCollege of Veterinary Medicine, Chungnam National University, Daejeon 34134, Republic of Korea.
Chungnam National University · KR

Funding

Basic Science Research Program through the National Research Foundation of Korea funded by the Ministry of Education 2021R1A6A1A03045495Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries 122012-2, 122060-2
6 · The paper itself

Abstract

Porcine epidemic diarrhea virus (PEDV) is a highly contagious enteric pathogen of swine. PEDV has been a major problem in the pig industry since its first identification in 1992. The aim of this study was to investigate the diversity, molecular characteristics, and phylogenetic relationships of PEDVs in field samples from Korea. Six PEDVs were identified from the field samples, and the full spike (S) glycoprotein gene sequences were analyzed. A phylogenetic analysis of the S gene sequences from the six isolates revealed that they were clustered into the G2b subgroup with genetic distance. The genetic identity of the nucleotide sequences and deduced amino acid sequences of the S genes of those isolates was 97.9-100% and 97.4-100%, respectively. A BLAST search for new PEDVs revealed an identity greater than 99.5% compared to the highest similarity of two different Korean strains. The CO-26K equivalent (COE) epitope had a 521H→Y/Q amino acid substitution compared to the subgroup G2b reference strain (KNU-1305). The CNU-22S11 had 28 amino acid substitutions compared to the KNU-1305 strain, which included two newly identified amino acid substitutions: 562S→F and 763P→L in the COE and SS6 epitopes, respectively. Furthermore, the addition and loss of N-linked glycosylation were observed in the CNU-22S11. The results suggest that various strains of PEDV are prevalent and undergoing evolution at swine farms in South Korea and can affect receptor specificity, virus pathogenicity, and host immune system evasion. Overall, this study provides an increased understanding of the prevalence and control of PEDV in South Korea.

Indexed as

Coronavirus InfectionsPorcine epidemic diarrhea virusSwine DiseasesAmino Acid SequenceAnimalsChinaDiarrheaEthylnitrosoureaPhylogenyRepublic of KoreaSpike Glycoprotein, CoronavirusSwine1-(2-chloroethyl)-1-nitrosoureaEthylnitrosoureaSpike Glycoprotein, Coronavirusmolecular characterizationphylogenetic analysisporcine epidemic diarrhea virusspike

Identifiers

PMID38140669
PMCPMC10748127
OpenAlexW4389819403

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.