Evidence map›Paper›PMID 38140642›Full record

ArticleViruses2023

Early Emerging SARS-CoV-2 Spike Mutants Are Diversified in Virologic Properties but Elicit Compromised Antibody Responses.

Junhao Fan, Shixiong Li, Yao Zhang, Jihao Zheng, Dongfang Wang, Yunxi Liao, Zhibo Cui, Dongyu Zhao, Dan H Barouch, Jingyou Yu

Abstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Junhao FanState Key Laboratory of Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510182, China.
Shixiong LiGuangzhou National Laboratory, Bio-Island, Guangzhou 510005, China.
Yao ZhangGuangzhou National Laboratory, Bio-Island, Guangzhou 510005, China.ORCID 0009-0008-8847-5057
Jihao ZhengGuangzhou National Laboratory, Bio-Island, Guangzhou 510005, China.
Dongfang WangGuangzhou National Laboratory, Bio-Island, Guangzhou 510005, China.
Yunxi LiaoDepartment of Biomedical Informatics, School of Basic Medical Sciences, Peking University, Beijing 100191, China.
Zhibo CuiGuangzhou National Laboratory, Bio-Island, Guangzhou 510005, China.ORCID 0009-0001-8715-1666
Dongyu ZhaoDepartment of Biomedical Informatics, School of Basic Medical Sciences, Peking University, Beijing 100191, China.ORCID 0000-0003-3882-0218
Dan H BarouchCenter for Virology and Vaccine Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA.
Jingyou YuState Key Laboratory of Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510182, China.ORCID 0000-0002-0775-6623

Funding

National Natural Science Foundation of China 82371831Young Talent Program of China HJJH22-004
6 · The paper itself

Abstract

Despite the effective antivirals and vaccines, COVID-19 remains a public health concern. The mutations that occurred during the early stage of the pandemic can be valuable in assessing the viral fitness and evolutionary trajectory. In this study, we analyzed a panel of 2969 spike sequences deposited in GISAID before April 2020 and characterized nine representative spike single-point mutants in detail. Compared with the WA01/2020, most (8 out of 9) mutants demonstrated an equivalent or diminished protein expression or processing, pseudovirus infectivity, and cell-cell fusion. Interestingly, most of the mutants in native form elicited minimum antibody responses in mice despite unaltered CD4+ and CD8+ T cell responses. The mutants remained sensitive to the antisera and the type I interferon. Taken together, these data suggest that the early emerging mutants are virologically divergent, and some of which showed transmission fitness. Our findings have important implications for the retrospective tracing of the early SARS-CoV-2 transmission and future pandemic preparedness.

Indexed as

COVID-19SARS-CoV-2Spike Glycoprotein, CoronavirusAnimalsAntibody FormationBiological EvolutionMiceRetrospective StudiesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2earlyimmunologySARS-CoV-2spikevirology

Identifiers

PMID38140642
PMCPMC10747620

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.