Evidence map›Paper›PMID 38140612›Full record

ArticleViruses2023

First Detection and Genetic Characterization of Swine Orthopneumovirus from Domestic Pig Farms in the Republic of Korea.

Jonghyun Park, Hye-Ryung Kim, Eon-Bee Lee, Sang-Kwon Lee, Won-Il Kim, Young S Lyoo, Choi-Kyu Park, Bok Kyung Ku, Hye-Young Jeoung, Kyoung-Ki Lee and 1 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Jonghyun ParkLaboratory of Veterinary Pharmacokinetics and Pharmacodynamics, Institute for Animal Biomedical Science, College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Republic of Korea.
Hye-Ryung KimDIVA Bio Incorporation, Daegu 41519, Republic of Korea.
Eon-Bee LeeLaboratory of Veterinary Pharmacokinetics and Pharmacodynamics, Institute for Animal Biomedical Science, College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Republic of Korea.ORCID 0000-0002-8668-4508
Sang-Kwon LeeInstitute for Veterinary Biomedical Science, College of Veterinary Medicine, Kyungpook National University, Daegu 41566, Republic of Korea.
Won-Il KimCollege of Veterinary Medicine, Jeonbuk National University, 79 Gobong-ro, Iksan 54596, Republic of Korea.ORCID 0000-0002-0465-0794
Young S LyooCollege of Veterinary Medicine, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Republic of Korea.
Choi-Kyu ParkInstitute for Veterinary Biomedical Science, College of Veterinary Medicine, Kyungpook National University, Daegu 41566, Republic of Korea.
Bok Kyung KuAnimal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea.ORCID 0000-0002-1892-8910
Hye-Young JeoungAnimal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea.
Kyoung-Ki LeeAnimal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea.
Seung-Chun ParkLaboratory of Veterinary Pharmacokinetics and Pharmacodynamics, Institute for Animal Biomedical Science, College of Veterinary Medicine, Kyungpook National University, 80 Daehak-ro, Daegu 41566, Republic of Korea.ORCID 0000-0001-8539-1087
Kyungpook National University · KRAnimal and Plant Quarantine Agency · KRJeonbuk National University · KRKonkuk University · KR

Funding

Animal and Plant Quarantine Agency B-1543069-2023-25-01
6 · The paper itself

Abstract

Novel swine orthopneumovirus (SOV) infections have been identified in pigs in the USA and some European countries but not in Asian countries, including South Korea, to date. The current study reports the first SOV infections in four domestic pig farms located in four provinces across South Korea. The detection rate of SOV in oral fluid samples using qRT-PCR was 4.4% (14/389), indicating the presence of the virus in pigs at commercial farms in Korea. Two complete genome sequences and one glycoprotein (G) gene sequence were obtained from SOV-positive samples. The complete genome analysis of KSOV-2201 and KSOV-2202 strains showed 98.2 and 95.4% homologies with a previously reported SOV, and the phylogenetic tree exhibited a high correlation with a previously reported SOV strain from the US and a canine pneumovirus (CPnV) strain from China. Based on the genetic analysis of the viral G gene, the murine pneumonia virus (MPV)-like orthopneumoviruses (MLOVs) were divided into two genogroups (G1 and G2). Seventeen CPnVs and two feline pneumoviruses were grouped into G1, while the Korean SOV strains identified in this study were grouped into G2 along with one SOV and two CPnVs. These results will contribute to expanding our understanding of the geographical distribution and genetic characteristics of the novel SOV in the global pig population.

Indexed as

PneumovirusSwine DiseasesAnimalsCatsDogsFarmsMicePhylogenyRepublic of KoreaRespiratory Syncytial VirusesSus scrofaSwinegenome sequencingphylogenetic analysispneumovirusswine orthopneumovirus

Identifiers

PMID38140612
PMCPMC10747143
OpenAlexW4389238324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.