Evidence map›Paper›PMID 38139230›Full record

ArticleInternational journal of molecular sciences2023

Prioritization of Fluorescence In Situ Hybridization (FISH) Probes for Differentiating Primary Sites of Neuroendocrine Tumors with Machine Learning.

Lucas Pietan, Hayley Vaughn, James R Howe, Andrew M Bellizzi, Brian J Smith, Benjamin Darbro, Terry Braun, Thomas Casavant

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lucas PietanInterdisciplinary Graduate Program in Genetics, University of Iowa, Iowa City, IA 52242, USA.
Hayley VaughnInterdisciplinary Graduate Program in Genetics, University of Iowa, Iowa City, IA 52242, USA.
James R HoweHealthcare Department of Surgery, University of Iowa, Iowa City, IA 52242, USA.ORCID 0000-0001-5312-5972
Andrew M BellizziDepartment of Pathology, University of Iowa, Iowa City, IA 52242, USA.
Brian J SmithDepartment of Biostatistics, University of Iowa, Iowa City, IA 52242, USA.
Benjamin DarbroInterdisciplinary Graduate Program in Genetics, University of Iowa, Iowa City, IA 52242, USA.
Terry BraunInterdisciplinary Graduate Program in Genetics, University of Iowa, Iowa City, IA 52242, USA.
Thomas CasavantInterdisciplinary Graduate Program in Genetics, University of Iowa, Iowa City, IA 52242, USA.

Funding

Project 4: New Approaches to Improving the Effectiveness of Radionuclide Targeted Treatments in Neuroendocrine TumorsP50CA174521 · NCI · UNIVERSITY OF IOWA · PI ODORISIO, THOMAS · 2015 to 2021
$13.2M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008629 · NIGMS · UNIVERSITY OF IOWA · PI EBERL, DANIEL F · 1997 to 2021
$4.1M
NCI NIH HHS P50 CA174521NIGMS NIH HHS T32 GM008629NIH HHS T32 GM 008629
6 · The paper itself

Abstract

Determining neuroendocrine tumor (NET) primary sites is pivotal for patient care as pancreatic NETs (pNETs) and small bowel NETs (sbNETs) have distinct treatment approaches. The diagnostic power and prioritization of fluorescence in situ hybridization (FISH) assay biomarkers for establishing primary sites has not been thoroughly investigated using machine learning (ML) techniques. We trained ML models on FISH assay metrics from 85 sbNET and 59 pNET samples for primary site prediction. Exploring multiple methods for imputing missing data, the impute-by-median dataset coupled with a support vector machine model achieved the highest classification accuracy of 93.1% on a held-out test set, with the top importance variables originating from the

Indexed as

Intestinal NeoplasmsNeuroendocrine TumorsPancreatic NeoplasmsHumansIn Situ Hybridization, FluorescenceMachine Learningbiomarkerfluorescence in situ hybridizationimputationmachine learningmodelneuroendocrine tumor

Identifiers

PMID38139230
PMCPMC10743810

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.