Evidence map›Paper›PMID 38139176›Full record

ArticleInternational journal of molecular sciences2023

Benchmarking of Two Peptide Clean-Up Protocols: SP2 and Ethyl Acetate Extraction for Sodium Dodecyl Sulfate or Polyethylene Glycol Removal from Plant Samples before LC-MS/MS.

Petra Martinková, Hana Konečná, Petr Gintar, Karolína Kryštofová, David Potěšil, Martin Trtílek, Zbyněk Zdráhal

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Proteome Analysis of SevenJournal of proteome research · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Petra MartinkováMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
Hana KonečnáMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
Petr GintarMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
Karolína KryštofováMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
David PotěšilMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
Martin TrtílekPhoton Systems Instruments, Spol. s r.o., Průmyslová 470, 664 24 Drásov, Czech Republic.
Zbyněk ZdráhalMendel Centre for Plant Genomics and Proteomics, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
Central European Institute of Technology · CZCentral European Institute of Technology – Masaryk University · CZMasaryk University · CZPhoton Systems Instruments (Czechia) · CZ

Funding

Ministry of Education, Youth and Sports of CR CZ.02.1.01/0.0/0.0/16_026/0008446Ministry of Education, Youth and Sports of CR ID:90254Ministry of Education, Youth and Sports of CR LM2023042
6 · The paper itself

Abstract

The success of bottom-up proteomic analysis frequently depends on the efficient removal of contaminants from protein or peptide samples before LC-MS/MS. For a peptide clean-up workflow, single-pot solid-phase-enhanced peptide sample preparation on carboxylate-modified paramagnetic beads (termed SP2) was evaluated for sodium dodecyl sulfate or polyethylene glycol removal from

Indexed as

Liquid Chromatography-Mass SpectrometryPolyethylene GlycolsAcetatesChromatography, LiquidPeptidesProteomicsSodium Dodecyl SulfateTandem Mass SpectrometryAcetatesethyl acetatePeptidesPolyethylene GlycolsSodium Dodecyl SulfateArabidopsis thalianadetergentethyl acetate extractionLC-MS/MSmagnetic beadspeptide clean-uppolyethylene glycolsodium dodecyl sulfateSP2

Identifiers

PMID38139176
PMCPMC10743447
OpenAlexW4389561170

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.