Evidence map›Paper›PMID 38138564›Full record

ArticleMolecules (Basel, Switzerland)2023

Marine-Derived Compounds as Potential Inhibitors of Hsp90 for Anticancer and Antimicrobial Drug Development: A Comprehensive In Silico Study.

Mebarka Ouassaf, Lotfi Bourougaa, Samiah Hamad Al-Mijalli, Emad M Abdallah, Ajmal R Bhat, Sarkar M A Kawsar

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

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  9. Exploring the Antiviral Potential ofPharmaceuticals (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 4 countries.

Mebarka OuassafGroup of Computational and Medicinal Chemistry, LMCE Laboratory, University of Biskra, Biskra 707000, Algeria.
Lotfi BourougaaGroup of Computational and Medicinal Chemistry, LMCE Laboratory, University of Biskra, Biskra 707000, Algeria.
Samiah Hamad Al-MijalliDepartment of Biology, College of Sciences, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia.ORCID 0000-0003-3160-6008
Emad M AbdallahDepartment of Science Laboratories, College of Science and Arts, Qassim University, Ar Rass 51921, Saudi Arabia.ORCID 0000-0003-0549-249X
Ajmal R BhatDepartment of Chemistry, RTM Nagpur University, Nagpur 440033, India.ORCID 0000-0003-4751-8379
Sarkar M A KawsarLaboratory of Carbohydrate and Nucleoside Chemistry, Department of Chemistry, Faculty of Science, University of Chittagong, Chittagong 4331, Bangladesh.ORCID 0000-0001-7964-9117
University of Biskra · DZPrincess Nourah bint Abdulrahman University · SAQassim University · SARashtrasant Tukadoji Maharaj Nagpur University · INUniversity of Chittagong · BD

Funding

The APC was funded by Princess Nourah Bint Abdulrahman University PNURSP2023R158
6 · The paper itself

Abstract

Marine compounds constitute a diverse and invaluable resource for the discovery of bioactive substances with promising applications in the pharmaceutical development of anti-inflammatory and antibacterial agents. In this study, a comprehensive methodology was employed, encompassing pharmacophore modeling, virtual screening, in silico ADMET assessment (encompassing aspects of absorption, distribution, metabolism, excretion, and toxicity), and molecular dynamics simulations. These methods were applied to identify new inhibitors targeting the Hsp90 protein (heat shock protein 90), commencing with a diverse assembly of compounds sourced from marine origins. During the virtual screening phase, an extensive exploration was conducted on a dataset comprising 31,488 compounds sourced from the CMNPD database, characterized by a wide array of molecular structures. The principal objective was the development of structure-based pharmacophore models, a valuable approach when the pool of known ligands is limited. The pharmacophore model DDRRR was successfully constructed within the active sites of the Hsp90 crystal structure. Subsequent docking studies led to the identification of six compounds (CMNPD

Indexed as

Anti-Infective AgentsAntineoplastic AgentsLigandsMolecular Docking SimulationMolecular Dynamics SimulationMolecular StructureAnti-Infective AgentsAntineoplastic AgentsLigandsADMEanti-bacterial agentsanticancerdocking simulationsdrug discoverymarine bioactive moleculesmolecular dynamics simulations

Identifiers

PMID38138564
PMCPMC10871121
OpenAlexW4389670670

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.