Evidence map›Paper›PMID 38137036›Full record

ArticleGenes2023

RNA-Sequencing Analysis Revealed Genes Associated with Sweet Potato (

Chen Li, Liang Zhang, Honghu Ji, Weihan Song, Ziyu Zhong, Meiqiao Jiang, Yungang Zhang, Qiang Li, Linrun Cheng, Meng Kou

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Chen LiJinhua Academy of Agricultural Sciences, Jinhua 321000, China.
Liang ZhangJinhua Academy of Agricultural Sciences, Jinhua 321000, China.
Honghu JiJinhua Academy of Agricultural Sciences, Jinhua 321000, China.
Weihan SongXuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou 221131, China.
Ziyu ZhongJinhua Academy of Agricultural Sciences, Jinhua 321000, China.
Meiqiao JiangJinhua Academy of Agricultural Sciences, Jinhua 321000, China.
Yungang ZhangXuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou 221131, China.
Qiang LiXuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou 221131, China.
Linrun ChengJinhua Academy of Agricultural Sciences, Jinhua 321000, China.
Meng KouXuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou 221131, China.
Jinhua Academy of Agricultural Sciences · CNSweet Potato Research Institute · CNMinistry of Agriculture and Rural Affairs · CN

Funding

2021 Academy-locality cooperation project in Jinhua 202104China Agriculture Research System of Sweetpotato CARS-10-SweetpotatoMajor Science and technology special project on breeding of new varieties for agriculture (Breeding of new dry grain varieties) in Zhejiang province, Breeding of new potato varieties 2021C02064-1
6 · The paper itself

Abstract

The sweet potato, which is an important tuber crop in China, is susceptible to a variety of pathogens and insect pests during cultivation and production. Stem rot is a common sweet potato disease that seriously affects tuber yield and quality. Unfortunately, there have been relatively few studies on the mechanism mediating the stem rot resistance of sweet potatoes. In this study, a transcriptome sequencing analysis was completed using Xushu 48 samples at different stages (T1, T2, and T3) of the stem rot infection. The T1 vs. T2, T1 vs. T3, and T2 vs. T3 comparisons detected 44,839, 81,436, and 61,932 differentially expressed genes (DEGs), respectively. The DEGs encoded proteins primarily involved in alanine, aspartate, and glutamate metabolism (ko00250), carbon fixation in photosynthetic organisms (ko00710), and amino sugar and nucleotide sugar metabolism (ko00520). Furthermore, some candidate genes induced by phytopathogen infections were identified, including gene-encoding receptor-like protein kinases (

Indexed as

Ipomoea batatasGene Expression ProfilingGenes, PlantPlant BreedingRNARNAgenestem rotsweet potatotranscription factortranscriptome

Identifiers

PMID38137036
PMCPMC10742929
OpenAlexW4389787861

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.