Evidence map›Paper›PMID 38137029›Full record

ArticleGenes2023

Epigenetic Profiling of Type 2 Diabetes Mellitus: An Epigenome-Wide Association Study of DNA Methylation in the Korean Genome and Epidemiology Study.

Hyein Seo, Jae-Ho Park, Jin-Taek Hwang, Hyo-Kyoung Choi, Soo-Hyun Park, Jangho Lee

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
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  3. Article
  4. Evolutionary Restructuring and Systematic Review of theJournal of developmental biology · 2026
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  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hyein SeoKorea Food Research Institute, Wanju-gun 55365, Jeollabuk-do, Republic of Korea.
Jae-Ho ParkKorea Food Research Institute, Wanju-gun 55365, Jeollabuk-do, Republic of Korea.ORCID 0000-0003-4428-436X
Jin-Taek HwangKorea Food Research Institute, Wanju-gun 55365, Jeollabuk-do, Republic of Korea.
Hyo-Kyoung ChoiKorea Food Research Institute, Wanju-gun 55365, Jeollabuk-do, Republic of Korea.
Soo-Hyun ParkKorea Food Research Institute, Wanju-gun 55365, Jeollabuk-do, Republic of Korea.ORCID 0000-0003-0968-558X
Jangho LeeKorea Food Research Institute, Wanju-gun 55365, Jeollabuk-do, Republic of Korea.ORCID 0000-0002-5604-821X
Korea Food Research Institute · KR

Funding

Korea Food Research Institute E0210400Korea Food Research Institute E0210601
6 · The paper itself

Abstract

Diabetes is characterized by persistently high blood glucose levels and severe complications and affects millions of people worldwide. In this study, we explored the epigenetic landscape of diabetes using data from the Korean Genome and Epidemiology Study (KoGES), specifically the Ansung-Ansan (AS-AS) cohort. Using epigenome-wide association studies, we investigated DNA methylation patterns in patients with type 2 diabetes mellitus (T2DM) and those with normal glucose regulation. Differential methylation analysis revealed 106 differentially methylated probes (DMPs), with the 10 top DMPs prominently associated with TXNIP, PDK4, NBPF20, ARRDC4, UFM1, PFKFB2, C7orf50, and ABCG1, indicating significant changes in methylation. Correlation analysis highlighted the association between the leading DMPs (e.g., cg19693031 and cg26974062 for TXNIP and cg26823705 for NBPF20) and key glycemic markers (fasting plasma glucose and hemoglobin A1c), confirming their relevance in T2DM. Moreover, we identified 62 significantly differentially methylated regions (DMRs) spanning 61 genes. A DMR associated with PDE1C showed hypermethylation, whereas DMRs associated with DIP2C, FLJ90757, PRSS50, and TDRD9 showed hypomethylation. PDE1C and TDRD9 showed a strong positive correlation between the CpG sites included in each DMR, which have previously been implicated in T2DM-related processes. This study contributes to the understanding of epigenetic modifications in T2DM. These valuable insights can be utilized in identifying potential biomarkers and therapeutic targets for effective management and prevention of diabetes.

Indexed as

Diabetes Mellitus, Type 2DNA MethylationEpigenesis, GeneticEpigenomeGenome-Wide Association StudyHumansPhosphofructokinase-2Republic of KoreaPFKFB2 protein, humanPhosphofructokinase-2DNA methylationepigenetic landscapeEWASKoGEStype 2 diabetes mellitus

Identifiers

PMID38137029
PMCPMC10743302
OpenAlexW4389711678

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.