Evidence map›Paper›PMID 38136579›Full record

ReviewBiomolecules2023

An Interpretable Classification Model Using Gluten-Specific TCR Sequences Shows Diagnostic Potential in Coeliac Disease.

Anna Fowler, Michael FitzPatrick, Aberami Shanmugarasa, Amro Sayed Fadel Ibrahim, Hannah Kockelbergh, Han-Chieh Yang, Amelia Williams-Walker, Kim Ngan Luu Hoang, Shelley Evans, Nicholas Provine and 2 more

Open access · goldAbstract readReview
In one paragraph

Review in Biomolecules, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 citations in OpenAlex.

  1. Gliadin-specific CD4Science advances · 2026
    Article
  2. Article
  3. Article
  4. Demonstration of T-Cell Monotypia Using Anti-TCRbeta1/2 (Diagnostics (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Anna FowlerDepartment of Health Data Science, Institute of Population Health, University of Liverpool, Liverpool L69 3GF, UK.
Michael FitzPatrickTranslational Gastroenterology Unit, Nuffield Department of Medicine, University of Oxford, Oxford OX3 9DU, UK.
Aberami ShanmugarasaSchool of Clinical Medicine, University of Cambridge, Cambridge CB2 0SP, UK.
Amro Sayed Fadel IbrahimDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, UK.
Hannah KockelberghDepartment of Health Data Science, Institute of Population Health, University of Liverpool, Liverpool L69 3GF, UK.
Han-Chieh YangDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, UK.
Amelia Williams-WalkerDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, UK.
Kim Ngan Luu HoangDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, UK.ORCID 0000-0001-5670-1832
Shelley EvansDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, UK.ORCID 0000-0003-3242-6017
Nicholas ProvineTranslational Gastroenterology Unit, Nuffield Department of Medicine, University of Oxford, Oxford OX3 9DU, UK.ORCID 0000-0002-9694-2216
Paul KlenermanTranslational Gastroenterology Unit, Nuffield Department of Medicine, University of Oxford, Oxford OX3 9DU, UK.
Elizabeth J SoilleuxDepartment of Pathology, University of Cambridge, Cambridge CB2 1QP, UK.ORCID 0000-0002-4032-7249
University of Cambridge · GBUniversity of Oxford · GBUniversity of Liverpool · GB

Funding

Wellcome TrustWellcome Trust 222426/Z/21/Z
6 · The paper itself

Abstract

Coeliac disease (CeD) is a T-cell mediated enteropathy triggered by dietary gluten which remains substantially under-diagnosed around the world. The diagnostic gold-standard requires histological assessment of intestinal biopsies taken at endoscopy while consuming a gluten-containing diet. However, there is a lack of concordance between pathologists in histological assessment, and both endoscopy and gluten challenge are burdensome and unpleasant for patients. Identification of gluten-specific T-cell receptors (TCRs) in the TCR repertoire could provide a less subjective diagnostic test, and potentially remove the need to consume gluten. We review published gluten-specific TCR sequences, and develop an interpretable machine learning model to investigate their diagnostic potential. To investigate this, we sequenced the TCR repertoires of mucosal CD4

Indexed as

Celiac DiseaseDietGlutensHumansReceptors, Antigen, T-CellT-LymphocytesGlutensReceptors, Antigen, T-Cellcoeliac diseasegluten-free dietmachine learningnext generation sequencingT-cell repertoire

Identifiers

PMID38136579
PMCPMC10742135
OpenAlexW4389056862

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.