Evidence map›Paper›PMID 38136574›Full record

ReviewBiomolecules2023

Protein Association in Solution: Statistical Mechanical Modeling.

Vojko Vlachy, Yurij V Kalyuzhnyi, Barbara Hribar-Lee, Ken A Dill

Abstract readReview
In one paragraph

Review in Biomolecules, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Vojko VlachyFaculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia.ORCID 0000-0002-1840-3348
Yurij V KalyuzhnyiInstitute for Condensed Matter Physics NASU, 79011 Lviv, Ukraine.ORCID 0000-0002-0631-9982
Barbara Hribar-LeeFaculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia.ORCID 0000-0002-9029-588X
Ken A DillLaufer Center for Physical and Quantitative Biology, Stony Brook University, New York, NY 11794, USA.ORCID 0000-0002-2390-2002

Funding

Solvation modeling for next-gen biomolecule simulationsRM1GM135136 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI COUTSIAS, EVANGELOS A., DILL, KEN A · 2020 to 2024
$6.0M
NIGMS NIH HHS RM1 GM135136
6 · The paper itself

Abstract

Protein molecules associate in solution, often in clusters beyond pairwise, leading to liquid phase separations and high viscosities. It is often impractical to study these multi-protein systems by atomistic computer simulations, particularly in multi-component solvents. Instead, their forces and states can be studied by liquid state statistical mechanics. However, past such approaches, such as the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory, were limited to modeling proteins as spheres, and contained no microscopic structure-property relations. Recently, this limitation has been partly overcome by bringing the powerful Wertheim theory of associating molecules to bear on protein association equilibria. Here, we review these developments.

Indexed as

ProteinsComputer SimulationSolventsProteinsSolventsantibodiesassociationphase transitionproteinsWertheim’s theory

Identifiers

PMID38136574
PMCPMC10742237

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.