Evidence map›Paper›PMID 38133446›Full record

ArticleTropical medicine and infectious disease2023

The Performance of Diagnostic Tests for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in the South African Population: A Scoping Review.

Natasha Samsunder, Nikita Devnarain, Aida Sivro, Ayesha B M Kharsany

Open access · goldAbstract readScoping Review
In one paragraph

Article in Tropical medicine and infectious disease, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Natasha SamsunderCentre for the AIDS Programme of Research in South Africa (CAPRISA), Durban 4013, South Africa.ORCID 0000-0003-3582-5718
Nikita DevnarainCentre for the AIDS Programme of Research in South Africa (CAPRISA), Durban 4013, South Africa.
Aida SivroCentre for the AIDS Programme of Research in South Africa (CAPRISA), Durban 4013, South Africa.
Ayesha B M KharsanyCentre for the AIDS Programme of Research in South Africa (CAPRISA), Durban 4013, South Africa.ORCID 0000-0001-7457-0194
Centre for the AIDS Programme of Research in South Africa · ZAPublic Health Agency of Canada · CA

Funding

Department of Science and Innovation Not providedFoundation for Innovative New Diagnostics CV21-0261The European & Developing Countries Clinical Trials partnership (EDCTP) RIA2020EF-2928
6 · The paper itself

Abstract

To determine the performance and reliability of diagnostic tests for the identification of SARS-CoV-2 infection in South Africa, we conducted a scoping review to identify published studies undertaken in the English language from March 2020 to August 2022 that evaluated the performance of antigen- and antibody-based diagnostic tests for SARS-CoV-2 in South Africa. We identified 17 relevant peer-reviewed articles; six reported on SARS-CoV-2 gene and/or antigen detection whilst 11 reported on antibody detection. Of the SARS-CoV-2 gene and/or antigen-based tests, sensitivity ranged from 40% to 100%, whilst for the antibody-based tests, sensitivity ranged from 13% to 100%. All tests evaluated were highly dependent on the stage of infection and the timing of sample collection. This scoping review demonstrated that no single SARS-CoV-2 gene and/or antigen- or antibody-based assay was sufficiently sensitive and specific simultaneously. The sensitivity of the tests was highly dependent on the timing of sample collection with respect to SARS-CoV-2 infection. In the case of SARS-CoV-2 gene and/or antigen detection, the earlier the collection of samples, the greater the sensitivity, while antibody detection tests showed better sensitivity using samples from later stages of infection.

Indexed as

antibodyantigendiagnostic testingRT-PCRSARS-CoV-2SARS-CoV-2 gene/sscoping review

Identifiers

PMID38133446
PMCPMC10748306
OpenAlexW4389247535

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.