Polarization- and Chaos-Game-Based Fingerprinting of Molecular Targets of Listeria Monocytogenes Vaccine and Fully Virulent Strains.

Dmitry A Zimnyakov, Marina V Alonova, Maxim S Lavrukhin, Anna M Lyapina, Valentina A Feodorova

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Article in Current issues in molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed

–field-weighted citation impact, top 67% of its field

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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0 citing papers in PubMed, 0 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Dmitry A ZimnyakovPhysics Department, Yury Gagarin State Technical University of Saratov, 77 Polytechnicheskaya Str., 410054 Saratov, Russia.ORCID 0000-0002-9787-7903

Marina V AlonovaPhysics Department, Yury Gagarin State Technical University of Saratov, 77 Polytechnicheskaya Str., 410054 Saratov, Russia.

Maxim S LavrukhinLaboratory for Fundamental and Applied Research, Saratov State University of Genetics, Biotechnology and Engineering Named after N.I. Vavilov, 335 Sokolovaya Str., 410005 Saratov, Russia.

Anna M LyapinaLaboratory for Fundamental and Applied Research, Saratov State University of Genetics, Biotechnology and Engineering Named after N.I. Vavilov, 335 Sokolovaya Str., 410005 Saratov, Russia.

Valentina A FeodorovaLaboratory for Fundamental and Applied Research, Saratov State University of Genetics, Biotechnology and Engineering Named after N.I. Vavilov, 335 Sokolovaya Str., 410005 Saratov, Russia.

Saratov State University · RUYuri Gagarin State Technical University of Saratov · RU

Funding

Russian Science Foundation 22-16-00165

6 · The paper itself

Abstract

Two approaches to the synthesis of 2D binary identifiers ("fingerprints") of DNA-associated symbol sequences are considered in this paper. One of these approaches is based on the simulation of polarization-dependent diffraction patterns formed by reading the modeled DNA-associated 2D phase-modulating structures with a coherent light beam. In this case, 2D binarized distributions of close-to-circular extreme polarization states are applied as fingerprints of analyzed nucleotide sequences. The second approach is based on the transformation of the DNA-associated chaos game representation (CGR) maps into finite-dimensional binary matrices. In both cases, the differences between the structures of the analyzed and reference symbol sequences are quantified by calculating the correlation coefficient of the synthesized binary matrices. A comparison of the approaches under consideration is carried out using symbol sequences corresponding to nucleotide sequences of the

Indexed as

binary mapschaos game representationDIVAidentificationListeria monocytogenesnucleotide sequencespolarization encoding

Identifiers

PMID38132474

DOI10.3390/cimb45120628

PMCPMC10742786

OpenAlexW4389669298

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.