Evidence map›Paper›PMID 38132359›Full record

ArticleBiology2023

Low-Dose Ionizing Radiation-Crosslinking Immunoprecipitation (LDIR-CLIP) Identified Irradiation-Sensitive RNAs for RNA-Binding Protein HuR-Mediated Decay.

Ji Won Lee, Hyejin Mun, Jeong-Hyun Kim, Seungbeom Ko, Young-Kook Kim, Min Ji Shim, Kyungmin Kim, Chul Woong Ho, Hyun Bong Park, Meesun Kim and 7 more

Open access · goldAbstract read
In one paragraph

Article in Biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 67% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 2 countries.

Ji Won LeeDepartment of Biology, College of Natural Sciences, Gangneung-Wonju National University, Gangneung-si 25457, Republic of Korea.
Hyejin MunDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC 29425, USA.
Jeong-Hyun KimDepartment of Medicine, University of Ulsan College of Medicine, Seoul 05505, Republic of Korea.
Seungbeom KoDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC 29425, USA.
Young-Kook KimBiomedical Sciences Graduate Program (BMSGP), Chonnam National University, Hwasun 58128, Republic of Korea.
Min Ji ShimDepartment of Biology, College of Natural Sciences, Gangneung-Wonju National University, Gangneung-si 25457, Republic of Korea.
Kyungmin KimDepartment of Biology, College of Natural Sciences, Gangneung-Wonju National University, Gangneung-si 25457, Republic of Korea.
Chul Woong HoDepartment of Biology, College of Natural Sciences, Gangneung-Wonju National University, Gangneung-si 25457, Republic of Korea.
Hyun Bong ParkDepartment of Biology, College of Natural Sciences, Gangneung-Wonju National University, Gangneung-si 25457, Republic of Korea.
Meesun KimResearch Center, Dongnam Institute of Radiological and Medical Science, Busan 46033, Republic of Korea.
Chaeyoung LeeResearch Center, Dongnam Institute of Radiological and Medical Science, Busan 46033, Republic of Korea.
Si Ho ChoiResearch Center, Dongnam Institute of Radiological and Medical Science, Busan 46033, Republic of Korea.
Jung-Woong KimDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul 06974, Republic of Korea.ORCID 0000-0003-4458-7213
Ji-Hoon JeongDepartment of Oncology Science, University of Oklahoma, Oklahoma City, OK 73104, USA.ORCID 0000-0002-2404-6850
Je-Hyun YoonDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC 29425, USA.ORCID 0000-0001-7615-8654
Kyung-Won MinDepartment of Biology, College of Natural Sciences, Gangneung-Wonju National University, Gangneung-si 25457, Republic of Korea.ORCID 0000-0002-8718-3588
Tae Gen SonResearch Center, Dongnam Institute of Radiological and Medical Science, Busan 46033, Republic of Korea.
Gangneung–Wonju National University · KRDongnam Institute of Radiological & Medical Sciences · KRMedical University of South Carolina · USUlsan College · KRChonnam National University · KROklahoma City University · US

Funding

National Research Foundation of Korea NRF-2022R1A2C4001528
6 · The paper itself

Abstract

Although ionizing radiation (IR) is widely used for therapeutic and research purposes, studies on low-dose ionizing radiation (LDIR) are limited compared with those on other IR approaches, such as high-dose gamma irradiation and ultraviolet irradiation. High-dose IR affects DNA damage response and nucleotide-protein crosslinking, among other processes; however, the molecular consequences of LDIR have been poorly investigated. Here, we developed a method to profile RNA species crosslinked to an RNA-binding protein, namely, human antigen R (HuR), using LDIR and high-throughput RNA sequencing. The RNA fragments isolated via LDIR-crosslinking and immunoprecipitation sequencing were crosslinked to HuR and protected from RNase-mediated digestion. Upon crosslinking HuR to target mRNAs such as

Indexed as

low-dose ionizing radiation (LDIR)post-transcriptional gene regulationRNA crosslinking

Identifiers

PMID38132359
PMCPMC10740889
OpenAlexW4389780451

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.