Evidence map›Paper›PMID 38130938›Full record

ArticleIS&T International Symposium on Electronic Imaging2023

Deploying Machine Learning Based Segmentation for Scientific Imaging Analysis at Synchrotron Facilities.

Guanhua Hao, Eric J Roberts, Tanny Chavez, Zhuowen Zhao, Elizabeth A Holman, Howard Yanxon, Adam Green, Harinarayan Krishnan, Daniela Ushizima, Dylan McReynolds and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in IS&T International Symposium on Electronic Imaging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. DLSIA: Deep Learning for Scientific Image Analysis.Journal of applied crystallography · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Guanhua HaoAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Eric J RobertsCenter for Advanced Mathematics for Energy Research Applications (CAMERA), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Tanny ChavezAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Zhuowen ZhaoAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Elizabeth A HolmanAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Howard YanxonAdvanced Photon Source (APS), Argonne National Laboratory; Lemont, IL 60439.
Adam GreenAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Harinarayan KrishnanAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Daniela UshizimaCenter for Advanced Mathematics for Energy Research Applications (CAMERA), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Dylan McReynoldsAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Nicholas SchwarzAdvanced Photon Source (APS), Argonne National Laboratory; Lemont, IL 60439.
Petrus H ZwartCenter for Advanced Mathematics for Energy Research Applications (CAMERA), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Alexander HexemerAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Dilworth Y ParkinsonAdvanced Light Source (ALS), Lawrence Berkeley National Laboratory; Berkeley, CA 94720.
Lawrence Berkeley National Laboratory · USArgonne National Laboratory · US

Funding

New Tools for Experimental Phasing of Twinned Diffraction DataR21GM129649 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI ZWART, PETRUS H · 2019 to 2020
$556k
NIGMS NIH HHS R21 GM129649
6 · The paper itself

Abstract

Scientific user facilities present a unique set of challenges for image processing due to the large volume of data generated from experiments and simulations. Furthermore, developing and implementing algorithms for real-time processing and analysis while correcting for any artifacts or distortions in images remains a complex task, given the computational requirements of the processing algorithms. In a collaborative effort across multiple Department of Energy national laboratories, the "MLExchange" project is focused on addressing these challenges. MLExchange is a Machine Learning framework deploying interactive web interfaces to enhance and accelerate data analysis. The platform allows users to easily upload, visualize, label, and train networks. The resulting models can be deployed on real data while both results and models could be shared with the scientists. The MLExchange web-based application for image segmentation allows for training, testing, and evaluating multiple machine learning models on hand-labeled tomography data. This environment provides users with an intuitive interface for segmenting images using a variety of machine learning algorithms and deep-learning neural networks. Additionally, these tools have the potential to overcome limitations in traditional image segmentation techniques, particularly for complex and low-contrast images.

Identifiers

PMID38130938
PMCPMC10735246
OpenAlexW4362684536

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.