Evidence map›Paper›PMID 38129860›Full record

ArticleBMC pulmonary medicine2023

SNP (A > G - rs13057211) but not GT(n) polymorphism in HMOX-1 promotor gene is associated with COVID-19 mortality.

Kerolos Fares, Mona K El-Deeb, Omar Elsammak, Amged Ouf, Hesham Mahmoud Sayd Saeed, Ayman Baess, Mohamed Elsammak, Eman El-Attar

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In one paragraph

Article in BMC pulmonary medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Kerolos FaresDepartment of Chemical Pathology, Medical Research Institute, Alexandria University, Alexandria, Egypt.
Mona K El-DeebDepartment of Chemical Pathology, Medical Research Institute, Alexandria University, Alexandria, Egypt.
Omar ElsammakFaculty of Medicine, Alexandria University, Alexandria, Egypt.
Amged OufDepartment of Biology and Biotechnology Graduate Program, School of Sciences and Engineering (SSE), The American University in Cairo (AUC), New Cairo, Egypt.
Hesham Mahmoud Sayd SaeedDepartment of Biotechnology, Institute of Graduate Studies and Research Alexandria University, Alexandria, Egypt.
Ayman BaessDepartment of Chest Diseases, Faculty of Medicine, Alexandria University, Alexandria, Egypt.
Mohamed ElsammakDepartment of Chemical Pathology, Medical Research Institute, Alexandria University, Alexandria, Egypt. Mohamed.elsammak@alexu.edu.eg.
Eman El-AttarDepartment of Chemical Pathology, Medical Research Institute, Alexandria University, Alexandria, Egypt.
Alexandria University · EGAl Jouf University · SAAmerican University in Cairo · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionCOVID-19 causes severe inflammatory respiratory distress syndrome. The global pandemic caused millions of cases of morbidity and mortality worldwide. Patients may present with variable symptoms including dyspnea, fever, and GIT manifestations. The HMOX-1 gene is located on the long (q) arm of chromosome 22 at position 12.3. HMOX-1 is expressed in all mammalian tissues at basal levels and is considered as a stress response enzyme. HMOX-1 has a specific polymorphic site with variable GT(n) repeats at the promotor region. Several authors evaluated the HMOX-1 GT(n) promoter polymorphism in different inflammatory conditions. We evaluated HMOX-1 promoter polymorphism in relation to serum Hemoxygenase level and inflammatory makers (CRP, Ferritin, PCT, IL-6 and D-dimer) in patients affected by SARS-COV-2 disease. SUBJECTS AND

methodsNinety patients confirmed to be infected with COVID-19 were followed up till the study end point (recovery and discharge or death). HMOX-1 promotor GT(n) polymorphism was evaluated using Sanger sequencing. HMOX-1 enzyme serum level was measured by ELISA and the level of different inflammatory markers was assessed by available commercial kits.

resultsA novel Single nucleotide polymorphism (SNP) (A > G) - rs13057211 in the GT(n) region of HMOX-1 promoter gene was found in 40 (61.5%) COVID-19 patients out of the studied 65 patients. This (A > G) SNP was associated with higher mortality rate in COVID-19 as it was detected in 27 patients (75% of the patients who succumbed to the disease) (p = 0.021, Odds ratio = 3.7; 95% CI:1.29-10.56). Serum IL-6 (Interleuken-6) was positively correlated the length of Hospital Stay (LOHS) and procalcitonin (PCT); (p = 0.014, r: 0.651 and p < 0.001, r:0.997) respectively while negatively correlated with levels of HMOX-1 enzyme serum level (p = 0.013, r: -0.61). CRP correlated positively with LOHS (p = 0.021, r = 0.4), PCT (p = 0.044, r = 0.425) and age (p < 0.001, r = 0.685). Higher levels of D-Dimer and PCT were observed in patients with the long repeat. There was no significant difference between patients who recovered and those who died from COVID-19 as regards HMOX-1 level and GT(n) polymorphism.

conclusionWe report a novel SNP (A > G, rs13057211) in the GT(n) region of HMOX-1 promoter gene that was associated with mortality in COVID-19 patients, however no significant difference was found in HMOX-1 serum level or HMOX-1 (GT)n repeats within the studied groups.

Indexed as

COVID-19Polymorphism, Single NucleotideHeme Oxygenase-1HumansInterleukin-6Promoter Regions, GeneticSARS-CoV-2Heme Oxygenase-1HMOX1 protein, humanInterleukin-6COVID-19IL-6Promoter GT(n) polymorphismSerum Hemoxygenase-1SNP

Identifiers

PMID38129860
PMCPMC10734135
OpenAlexW4390058780

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.