Evidence map›Paper›PMID 38129691›Full record

ArticleNature cell biology2024

Quantitative subcellular reconstruction reveals a lipid mediated inter-organelle biogenesis network.

Richard G Lee, Danielle L Rudler, Samuel A Raven, Liuyu Peng, Anaëlle Chopin, Edward S X Moh, Tim McCubbin, Stefan J Siira, Samuel V Fagan, Nicholas J DeBono and 11 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  4. Mitochondrial membrane remodeling in stress adaptation: Lipid control of organelle quality.Protein science : a publication of the Protein Society · 2026
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  17. TCR signal-enhancing mutation alters lipid metabolism of thymocytes and impairs antitumor immunity of mature T cells.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 1 country.

Richard G LeeHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.
Danielle L RudlerHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.
Samuel A RavenHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.
Liuyu PengSchool of Chemistry, The University of Melbourne, Parkville, Victoria, Australia.
Anaëlle ChopinHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.ORCID http://orcid.org/0009-0006-0390-6723
Edward S X MohARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, New South Wales, Australia.
Tim McCubbinAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Queensland, Australia.ORCID http://orcid.org/0000-0002-9707-6532
Stefan J SiiraHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.ORCID http://orcid.org/0000-0002-8391-0143
Samuel V FaganHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.ORCID http://orcid.org/0009-0002-3817-587X
Nicholas J DeBonoARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0001-5452-3008
Maike StentenbachHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.ORCID http://orcid.org/0000-0002-1933-9149
Jasmin BrowneHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.ORCID http://orcid.org/0000-0002-1413-2026
Filip F RackhamHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.
Ji LiCentre for Medical Research, The University of Western Australia, QEII Medical Centre, Nedlands, Western Australia, Australia.
Kaylene J SimpsonSir Peter MacCallum Department of Oncology, University of Melbourne, Parkville, Victoria, Australia.
Esteban MarcellinAustralian Institute for Bioengineering and Nanotechnology, The University of Queensland, Queensland, Australia.
Nicolle H PackerARC Centre of Excellence in Synthetic Biology, Macquarie University, Sydney, New South Wales, Australia.
Gavin E ReidSchool of Chemistry, The University of Melbourne, Parkville, Victoria, Australia.
Benjamin S PadmanTelethon Kids Institute, Northern Entrance, Perth Children's Hospital, Nedlands, Western Australia, Australia.ORCID http://orcid.org/0000-0002-5710-6100
Oliver RackhamHarry Perkins Institute of Medical Research, QEII Medical Centre, Nedlands, Western Australia, Australia.
Aleksandra FilipovskaARC Centre of Excellence in Synthetic Biology, QEII Medical Centre, Nedlands, Western Australia, Australia. aleksandra.filipovska@uwa.edu.au.ORCID http://orcid.org/0000-0002-6998-8403
The Kids Research Institute Australia · AUARC Centre of Excellence in Synthetic Biology · AUThe University of Melbourne · AUThe University of Western Australia · AUThe University of Queensland · AUCurtin University · AUHarry Perkins Institute of Medical Research · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structures and functions of organelles in cells depend on each other but have not been systematically explored. We established stable knockout cell lines of peroxisomal, Golgi and endoplasmic reticulum genes identified in a whole-genome CRISPR knockout screen for inducers of mitochondrial biogenesis stress, showing that defects in peroxisome, Golgi and endoplasmic reticulum metabolism disrupt mitochondrial structure and function. Our quantitative total-organelle profiling approach for focussed ion beam scanning electron microscopy revealed in unprecedented detail that specific organelle dysfunctions precipitate multi-organelle biogenesis defects, impair mitochondrial morphology and reduce respiration. Multi-omics profiling showed a unified proteome response and global shifts in lipid and glycoprotein homeostasis that are elicited when organelle biogenesis is compromised, and that the resulting mitochondrial dysfunction can be rescued with precursors for ether-glycerophospholipid metabolic pathways. This work defines metabolic and morphological interactions between organelles and how their perturbation can cause disease.

Indexed as

Organelle BiogenesisOrganellesGolgi ApparatusLipidsMitochondriaPeroxisomesLipids

Identifiers

PMID38129691
OpenAlexW4390051982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.