Evidence map›Paper›PMID 38129415›Full record

ArticleNature communications2023

The Mycobacterium tuberculosis methyltransferase Rv2067c manipulates host epigenetic programming to promote its own survival.

Prakruti R Singh, Venkatareddy Dadireddy, Shubha Udupa, Shashwath Malli Kalladi, Somnath Shee, Sanjeev Khosla, Raju S Rajmani, Amit Singh, Suryanarayanarao Ramakumar, Valakunja Nagaraja

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. mBio · 2026
    Article
  2. Epigenetic Reprogramming byAntibiotics (Basel, Switzerland) · 2026
    Review
  3. Review
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Prakruti R Singh *Department of Microbiology & Cell Biology, Indian Institute of Science (IISc), Bengaluru, India.ORCID 0000-0003-4853-846X
Venkatareddy Dadireddy *Department of Physics, Indian Institute of Science, Bengaluru, India.ORCID 0000-0002-0271-941X
Shubha UdupaDepartment of Microbiology & Cell Biology, Indian Institute of Science (IISc), Bengaluru, India.
Shashwath Malli KalladiDepartment of Microbiology & Cell Biology, Indian Institute of Science (IISc), Bengaluru, India.
Somnath SheeCentre for Infectious Disease Research (CIDR), Department of Microbiology and Cell Biology, Indian Institute of Science (IISc), Bengaluru, India.
Sanjeev KhoslaCouncil of Scientific and Industrial Research-Institute of Microbial Technology, Chandigarh (CSIR -IMTech), Chandigarh, India.
Raju S RajmaniCentre for Infectious Disease Research (CIDR), Department of Microbiology and Cell Biology, Indian Institute of Science (IISc), Bengaluru, India.
Amit SinghCentre for Infectious Disease Research (CIDR), Department of Microbiology and Cell Biology, Indian Institute of Science (IISc), Bengaluru, India.ORCID 0000-0001-6761-1664
Suryanarayanarao RamakumarDepartment of Physics, Indian Institute of Science, Bengaluru, India.ORCID 0000-0003-0823-359X
Valakunja NagarajaDepartment of Microbiology & Cell Biology, Indian Institute of Science (IISc), Bengaluru, India. vraj@iisc.ac.in.ORCID 0000-0002-3298-8741
Indian Institute of Science Bangalore · INJawaharlal Nehru Centre for Advanced Scientific Research · INInstitute of Microbial Technology · IN

Funding

Department of Biotechnology, Ministry of Science and Technology (DBT) BT/PR13522/CoE/34/27/2015DST | Science and Engineering Research Board (SERB) CRG/2019/000077
6 · The paper itself

Abstract

Mycobacterium tuberculosis has evolved several mechanisms to counter host defense arsenals for its proliferation. Here we report that M. tuberculosis employs a multi-pronged approach to modify host epigenetic machinery for its survival. It secretes methyltransferase (MTase) Rv2067c into macrophages, trimethylating histone H3K79 in a non-nucleosomal context. Rv2067c downregulates host MTase DOT1L, decreasing DOT1L-mediated nucleosomally added H3K79me3 mark on pro-inflammatory response genes. Consequent inhibition of caspase-8-dependent apoptosis and enhancement of RIPK3-mediated necrosis results in increased pathogenesis. In parallel, Rv2067c enhances the expression of SESTRIN3, NLRC3, and TMTC1, enabling the pathogen to overcome host inflammatory and oxidative responses. We provide the structural basis for differential methylation of H3K79 by Rv2067c and DOT1L. The structures of Rv2067c and DOT1L explain how their action on H3K79 is spatially and temporally separated, enabling Rv2067c to effectively intercept the host epigenetic circuit and downstream signaling.

Indexed as

MethyltransferasesMycobacterium tuberculosisEpigenesis, GeneticHistonesMethylationHistonesMethyltransferases

Identifiers

PMID38129415
PMCPMC10739865
OpenAlexW4390052990

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.