Evidence map›Paper›PMID 38129291›Full record

ArticleMolecular oncology2024

Serum DNA methylome of the colorectal cancer serrated pathway enables non-invasive detection.

María Gallardo-Gómez, Lara Costas-Ríos, Carlos A Garcia-Prieto, Lara Álvarez-Rodríguez, Luis Bujanda, Maialen Barrero, Antoni Castells, Francesc Balaguer, Rodrigo Jover, Manel Esteller and 4 more

Open access · goldAbstract read
In one paragraph

Article in Molecular oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 1 country.

María Gallardo-GómezCINBIO, Universidade de Vigo, Spain.
Lara Costas-RíosCINBIO, Universidade de Vigo, Spain.
Carlos A Garcia-PrietoJosep Carreras Leukaemia Research Institute (IJC), Badalona, Spain.
Lara Álvarez-RodríguezCINBIO, Universidade de Vigo, Spain.
Luis BujandaDepartment of Gastroenterology, Biodonostia Health Research Institute, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Universidad del País Vasco (UPV/EHU), San Sebastián, Spain.
Maialen BarreroDepartment of Oncology, Hospital Universitario Donostia, San Sebastián, Spain.
Antoni CastellsGastroenterology Department, Hospital Clínic, IDIBAPS, CIBERehd, University of Barcelona, Spain.
Francesc BalaguerGastroenterology Department, Hospital Clínic, IDIBAPS, CIBERehd, University of Barcelona, Spain.
Rodrigo JoverServicio de Medicina Digestiva, Hospital General Universitario Dr. Balmis ISABIAL, Universidad Miguel Hernández, Alicante, Spain.
Manel EstellerJosep Carreras Leukaemia Research Institute (IJC), Badalona, Spain.ORCID 0000-0003-4490-6093
Antoni Tardío BaigesDepartment of Pathology, Hospital Álvaro Cunqueiro, Instituto de Investigación Biomédica Galicia Sur, Vigo, Spain.
Joaquín González-Carreró FojónDepartment of Pathology, Hospital Álvaro Cunqueiro, Instituto de Investigación Biomédica Galicia Sur, Vigo, Spain.
Joaquín CubiellaDepartment of Gastroenterology, Complexo Hospitalario Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBERehd), Ourense, Spain.
Loretta De ChiaraCINBIO, Universidade de Vigo, Spain.ORCID 0000-0001-7700-6417
Galicia Sur Biomedical Foundation · ESHospital Clínic de Barcelona · ESUniversidade de Vigo · ESBarcelona Supercomputing Center · ESBiogipuzkoa Health Research Institute · ESCentro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas · ESInstitució Catalana de Recerca i Estudis Avançats · ESUniversitat de Miguel Hernández d'Elx · ESUniversity of the Basque Country · ES

Funding

Consellería de Cultura, Educación e Ordenación Universitaria, Xunta de Galicia ED431G/02Fundación Científica Asociación Española Contra el Cáncer GCB13131592CASTInstituto de Salud Carlos III PI15/02007Ministerio de Educación, Cultura y Deporte FPU15/02350
6 · The paper itself

Abstract

The clinical relevance of the colorectal cancer serrated pathway is evident, but the screening of serrated lesions remains challenging. We aimed to characterize the serum methylome of the serrated pathway and to evaluate circulating cell-free DNA (cfDNA) methylomes as a potential source of biomarkers for the non-invasive detection of serrated lesions. We collected serum samples from individuals with serrated adenocarcinoma (SAC), traditional serrated adenomas, sessile serrated lesions, hyperplastic polyps and individuals with no colorectal findings. First, we quantified cfDNA methylation with the MethylationEPIC array. Then, we compared the methylation profiles with tissue and serum datasets. Finally, we evaluated the utility of serum cfDNA methylation biomarkers. We identified a differential methylation profile able to distinguish high-risk serrated lesions from no serrated neoplasia, showing concordance with tissue methylation from SAC and sessile serrated lesions. Serum methylation profiles are pathway-specific, clearly separating serrated lesions from conventional adenomas. The combination of ninjurin 2 (NINJ2) and glutamate-rich 1 (ERICH1) methylation discriminated high-risk serrated lesions and SAC with 91.4% sensitivity (64.4% specificity), while zinc finger protein 718 (ZNF718) methylation reported 100% sensitivity for the detection of SAC (96% specificity). This is the first study exploring the serum methylome of serrated lesions. Differential methylation of cfDNA can be used for the non-invasive detection of colorectal serrated lesions.

Indexed as

Biomarkers, TumorColorectal NeoplasmsDNA MethylationAdenomaAgedCell-Free Nucleic AcidsEpigenomeFemaleHumansMaleMiddle AgedBiomarkers, TumorCell-Free Nucleic Acidscirculating cell‐free DNADNA methylationnon‐invasive biomarkersscreeningserrated colorectal cancerserrated lesions

Identifiers

PMID38129291
PMCPMC11547225
OpenAlexW4390078468

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.