Evidence map›Paper›PMID 38128824›Full record

ArticleJournal of molecular biology2024

Molecular Determinants of PQBP1 Binding to the HIV-1 Capsid Lattice.

Juliana Piacentini, Dale S Allen, Barbie K Ganser-Pornillos, Sumit K Chanda, Sunnie M Yoh, Owen Pornillos

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Juliana PiacentiniUniversity of Virginia, Department of Molecular Physiology & Biological Physics, Charlottesville, VA, USA.
Dale S AllenThe Scripps Research Institute, Department of Immunology and Microbiology, La Jolla, CA, USA.
Barbie K Ganser-PornillosUniversity of Virginia, Department of Molecular Physiology & Biological Physics, Charlottesville, VA, USA; University of Utah, Department of Biochemistry, Salt Lake City, UT, USA.
Sumit K ChandaThe Scripps Research Institute, Department of Immunology and Microbiology, La Jolla, CA, USA.
Sunnie M YohThe Scripps Research Institute, Department of Immunology and Microbiology, La Jolla, CA, USA. Electronic address: syoh@scripps.edu.
Owen PornillosUniversity of Virginia, Department of Molecular Physiology & Biological Physics, Charlottesville, VA, USA; University of Utah, Department of Biochemistry, Salt Lake City, UT, USA. Electronic address: owen@biochem.utah.edu.
Scripps Research Institute · USUniversity of Utah · USUniversity of Virginia · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
CHEETAH Center for the Structural Biology of HIV Infection, Restriction, and Viral DynamicsU54AI170856 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI CHRISTOPHER P. HILL · 2022 to 2026
$34.4M
Reversing Immune Dysfunction for HIV-1 EradicationUM1AI164561 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SUMIT K CHANDA, Paula M Cannon · 2021 to 2026
$30.0M
Innate Immune Surveillance of HIV-1 During Transmission and Systemic InfectionR01AI127302 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI CHANDA, SUMIT K, GARCIA-SASTRE, ADOLFO · 2017 to 2021
$4.4M
Determinants of HIV-1 innate immune sensing and its role in shaping the lymphoid environment.R01AI177265 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SUMIT K CHANDA, Sunnie Yoh · 2023 to 2026
$3.4M
Molecular Electron Microscopy Core Facility ImprovementsG20RR031199 · NCRR · UNIVERSITY OF VIRGINIA · PI SHUPNIK, MARGARET A · 2010 to 2010
$2.0M
300 keV Liquid Helium Robotic MicroscopeS10RR025067 · NCRR · UNIVERSITY OF VIRGINIA · PI EGELMAN, EDWARD H. · 2009 to 2009
$2.0M
Training in Molecular BiophysicsT32GM080186 · NIGMS · UNIVERSITY OF VIRGINIA · PI NAKAMOTO, ROBERT K. · 2008 to 2019
$1.5M
HIV innate sensing in glial cells and inflammationR21MH129205 · NIMH · RUSH UNIVERSITY MEDICAL CENTER · PI INACIO MAMEDE, JOAO FILIPE · 2022 to 2023
$467k
NCRR NIH HHS G20 RR031199NCRR NIH HHS S10 RR025067NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI127302NIAID NIH HHS R01 AI177265NIAID NIH HHS U54 AI170856NIAID NIH HHS UM1 AI164561NIGMS NIH HHS T32 GM080186NIMH NIH HHS R21 MH129205
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) stimulates innate immune responses upon infection, including cyclic GMP-AMP synthase (cGAS) signaling that results in type I interferon production. HIV-1-induced activation of cGAS requires the host cell factor polyglutamine binding protein 1 (PQBP1), an intrinsically disordered protein that bridges capsid recognition and cGAS recruitment. However, the molecular details of PQBP1 interactions with the HIV-1 capsid and their functional implications remain poorly understood. Here, we show that PQBP1 binds to HIV-1 capsids through charge complementing contacts between acidic residues in the N-terminal region of PQBP1 and an arginine ring in the central channel of the HIV-1 CA hexamer that makes up the viral capsid. These studies reveal the molecular details of PQBP1's primary interaction with the HIV-1 capsid and suggest that additional elements are likely to contribute to stable capsid binding.

Indexed as

CapsidDNA-Binding ProteinsHIV-1Capsid ProteinsHumansImmunity, InnateNucleotidyltransferasesProtein BindingProtein ConformationCapsid ProteinsDNA-Binding ProteinsNucleotidyltransferasesPQBP1 protein, humancharge complementationhost factorsinnate immune responsevirus capsid

Identifiers

PMID38128824
PMCPMC10885737
OpenAlexW4389966095

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.