Evidence map›Paper›PMID 38126664›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2024

Computational simulation of JAK/STAT signaling in somatic versus germline stem cells.

Willis X Li

Open access · bronzeAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Willis X LiDepartment of Medicine, University of California San Diego, La Jolla, California, USA.ORCID 0000-0001-9041-7341
University of California San Diego · US

Funding

Mechanism of heterochromatin regulation by STATR01GM131044 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LI, WILLIS X · 2018 to 2021
$1.3M
Functions of a novel suppressor of oncogenic RasR03CA277213 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LI, WILLIS X · 2023 to 2024
$158k
NCI NIH HHS R03 CA277213NIGMS NIH HHS R01 GM131044NIGMS NIH HHS R01GM131044
6 · The paper itself

Abstract

backgroundThe Janus kinase/signal transducer and activator of transcription (JAK/STAT) signaling pathway regulates a variety of cellular processes. A major activation event in this pathway involves the phosphorylation of a tyrosine of STAT, converting unphosphorylated STAT (uSTAT) to phosphorylated STAT (pSTAT), an active transcription factor. In a noncanonical role, uSTAT contributes to the maintenance of heterochromatin stability. As such, an increase in pSTAT concurrently reduces uSTAT, resulting in heterochromatin loss, as observed in Drosophila somatic tissues. Paradoxically, an opposing phenomenon occurs in Drosophila male germline stem cells (GSCs), where the JAK/STAT pathway remains persistently active due to a continuous supply of ligands. Here, computational simulations were employed to dissect JAK/STAT pathway activation under different cellular contexts, mimicking somatic and germline cells. In these simulations, ordinary differential equations were leveraged to replicate the chemical reactions governing JAK/STAT signaling under different conditions.

resultsThe outcomes indicate that transient ligand stimulation, typical in somatic tissues, led to a momentary reduction in uSTAT levels. Conversely, sustained ligand stimulation, a characteristic feature of the GSC niche, resulted in elevated uSTAT levels at equilibrium.

conclusionThe simulation suggests that the duration of ligand exposure could explain the observed opposite effects of JAK/STAT activation on heterochromatin in somatic versus GSCs.

Indexed as

Computer SimulationGerm CellsJanus KinasesSignal TransductionSTAT Transcription FactorsAnimalsDrosophilaMaleModels, BiologicalPhosphorylationStem CellsJanus KinasesSTAT Transcription Factorscomputer modelingDrosophilagermline stem cell (GSC)heterochromatinnoncanonical STAT

Identifiers

PMID38126664
PMCPMC11190031
OpenAlexW4390059217

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.