Evidence map›Paper›PMID 38124055›Full record

ArticleBMC genomics2023

Transcriptome analysis of hypothalamus and pituitary tissues reveals genetic mechanisms associated with high egg production rates in Changshun green-shell laying hens.

Wenbin Xu, Ren Mu, Tuya Gegen, Tiantian Ran, Qi Wu, Di Wen, Fen Wang, Zhi Chen

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Wenbin XuCollege of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Jianjiang Road 5, Duyun, 558000, China.
Ren MuCollege of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Jianjiang Road 5, Duyun, 558000, China. muren0224@163.com.
Tuya GegenQiannan Key Laboratory of Applied Biotechnology for Livestock and Poultry, Duyun, 558000, China.
Tiantian RanCollege of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Jianjiang Road 5, Duyun, 558000, China.
Qi WuCollege of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Jianjiang Road 5, Duyun, 558000, China.
Di WenCollege of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Jianjiang Road 5, Duyun, 558000, China.
Fen WangCollege of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Jianjiang Road 5, Duyun, 558000, China.
Zhi ChenCollege of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Jianjiang Road 5, Duyun, 558000, China. 328246780@qq.com.
Qiannan Normal College For Nationalities · CN

Funding

Education Quality Improvement Project of Qiannan Normal University for Nationalities No.2021xJG016Guizhou Provincial Basic Research Program (Natural Science) No.ZK2021167Guizhou Provincial Basic Research Program (Natural Science) No.ZK2023455Natural Science Research Project of the Education Department of the Guizhou Province No.KY2020071Natural Science Research Project of the Education Department of the Guizhou Province (Innovation team) No.2023089
6 · The paper itself

Abstract

backgroundChangshun green-shell laying hens are unique to the Guizhou Province, China, and have high egg quality but relatively low yield. Egg production traits are regulated by the hypothalamus-pituitary-ovary axis. However, the underlying mechanism remains unclear. Thus, we conducted RNA sequencing of hypothalamic and pituitary tissues from low- and high-yielding Changshun green-shell laying hens to identify critical pathways and candidate genes involved in controlling the egg production rate.

resultsMore than 39 million clean reads per sample were obtained, and more than 82% were mapped to the Gallus gallus genome. Further analysis identified 1,817 and 1,171 differentially expressed genes (DEGs) in the hypothalamus and pituitary, respectively. Nineteen DEGs were upregulated in both the hypothalamus and pituitary of high-yielding chickens. The functions of these DEGs were mainly associated with ion transport or signal transduction. Gene set enrichment analysis revealed that the pathways enriched in the hypothalamus were mainly associated with gonadotropin-releasing hormone (GnRH) secretion, neurotransmitter release, and circadian rhythms. The pathways enriched in the pituitary were mainly associated with GnRH secretion, energy metabolism, and signal transduction. Five and four DEGs in the hypothalamus and pituitary, respectively, were selected randomly for qRT-PCR analysis. The expression trends determined via qRT-PCR were consistent with the RNA-seq results.

conclusionsThe current study identified 19 DEGs upregulated in both the hypothalamus and pituitary gland, which could provide an important reference for further studies on the molecular mechanisms underlying egg production in Changshun green-shell laying hens. In addition, enrichment analysis showed that GnRH secretion and signal transduction, especially neurotransmitter release, play crucial roles in the regulation of egg production.

Indexed as

ChickensPituitary GlandAnimalsFemaleGene Expression ProfilingGonadotropin-Releasing HormoneHypothalamusNeurotransmitter AgentsTranscriptomeGonadotropin-Releasing HormoneNeurotransmitter AgentsChangshun green-shell laying hensEgg productionHypothalamusPituitaryTranscriptome analysis

Identifiers

PMID38124055
PMCPMC10734086
OpenAlexW4389996712

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.