Evidence map›Paper›PMID 38123722›Full record

ArticleScientific reports2023

Molecular insights into the mechanisms of a leaf color mutant in Anoectochilus roxburghii by gene mapping and transcriptome profiling based on PacBio Sequel II.

Huiming Huang, Hui Zou, Hongting Lin, Yimin Dai, Jiangbo Lin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. De Novo Transcriptome Assembly ofPlants (Basel, Switzerland) · 2024
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Huiming HuangInstitute of Subtropical Agriculture, Fujian Academy of Agricultural Sciences, 1499 Jiulong Avenue, Zhangzhou, 363005, Fujian, China.
Hui ZouInstitute of Subtropical Agriculture, Fujian Academy of Agricultural Sciences, 1499 Jiulong Avenue, Zhangzhou, 363005, Fujian, China.
Hongting LinZhangzhou Fourth Municipal Hospital of Fujian Province, 41 Baiyun Village, Zhangzhou, 363100, Fujian, China.
Yimin DaiInstitute of Subtropical Agriculture, Fujian Academy of Agricultural Sciences, 1499 Jiulong Avenue, Zhangzhou, 363005, Fujian, China.
Jiangbo LinInstitute of Subtropical Agriculture, Fujian Academy of Agricultural Sciences, 1499 Jiulong Avenue, Zhangzhou, 363005, Fujian, China. linjiangbo1976@163.com.
Institute of Subtropical Agriculture · CNZhangzhou Municipal Hospital of Fujian Province · CN

Funding

Fujian Academy of Agricultural Sciences CXTD2021001-2Fujian Provincial Department of Science and Technology 2020R1030003Fujian Provincial Department of Science and Technology 2021R1030001
6 · The paper itself

Abstract

Plants with partial or complete loss of chlorophylls and other pigments are frequently occurring in nature but not commonly found. In the present study, we characterize a leaf color mutant 'arly01' with an albino stripe in the middle of the leaf, which is an uncommon ornamental trait in Anoectochilus roxburghii. The albino "mutant" middle portion and green "normal" leaf parts were observed by transmission electron microscopy (TEM), and their pigment contents were determined. The mutant portion exhibited underdevelopment of plastids and had reduced chlorophyll and other pigment (carotenoid, anthocyanin, and flavonoid) content compared to the normal portion. Meanwhile, comparative transcript analysis and metabolic pathways mapping showed that a total of 599 differentially expressed genes were mapped to 78 KEGG pathways, most of which were down-regulated in the mutant portion. The five most affected metabolic pathways were determined to be oxidative phosphorylation, photosynthesis system, carbon fixation & starch and sucrose metabolism, porphyrin and chlorophyll metabolism, and flavonoid biosynthesis. Our findings suggested that the mutant 'arly01' was a partial albinism of A. roxburghii, characterized by the underdevelopment of chloroplasts, low contents of photosynthetic and other color pigments, and a number of down-regulated genes and metabolites. With the emergence of ornamental A. roxburghii in southern China, 'arly01' could become a popular cultivar due to its unique aesthetics.

Indexed as

ChlorophyllGene Expression ProfilingChromosome MappingColorFlavonoidsGene Expression Regulation, PlantPlant LeavesTranscriptomeChlorophyllFlavonoids

Identifiers

PMID38123722
PMCPMC10733416
OpenAlexW4389995525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.