Evidence map›Paper›PMID 38117877›Full record

ArticleScience advances2023

NET formation is a default epigenetic program controlled by PAD4 in apoptotic neutrophils.

Yanfang Peipei Zhu, Mary Speir, ZheHao Tan, Jamie Casey Lee, Cameron J Nowell, Alyce A Chen, Hajera Amatullah, Ari J Salinger, Carolyn J Huang, Gio Wu and 16 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
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  8. HypervirulentMicrobiology spectrum · 2026
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  17. Nutrients · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 9 institutions in 2 countries.

Yanfang Peipei ZhuDepartment of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0001-6908-0860
Mary SpeirDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA 02115, USA.
ZheHao TanDepartment of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0009-0009-3116-0203
Jamie Casey LeeDepartment of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0001-5465-3670
Cameron J NowellMonash Institute of Pharmaceutical Sciences, Parkville, Victoria 3052, Australia.ORCID 0000-0002-8662-9840
Alyce A ChenDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA 02115, USA.ORCID 0000-0002-5018-8908
Hajera AmatullahDepartment of Medicine, Division of Gastroenterology and the Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Harvard Medical School, Boston MA 02114, USA.
Ari J SalingerProgram in Chemical Biology and Department of Biochemistry and Molecular Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Carolyn J HuangDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA 02115, USA.ORCID 0000-0003-0948-979X
Gio WuDepartment of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0009-0005-0748-724X
Weiqi PengDepartment of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.
Kasra AskariScripps Research Institute, La Jolla, CA 92037, USA.ORCID 0000-0003-0938-8972
Eric GriffisNikon Imaging Center, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-2832-6649
Majid GhassemianBiomolecular and Proteomics Mass Spectrometry Facility, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-1026-5152
Jennifer SantiniUCSD School of Medicine Microscopy Core, University of California San Diego, La Jolla 92093, CA, USA.
Motti GerlicDepartment of Clinical Microbiology and Immunology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel.ORCID 0000-0001-9518-1833
William B KiossesLa Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0003-1832-9050
Sergio D CatzScripps Research Institute, La Jolla, CA 92037, USA.ORCID 0000-0002-1873-0277
Hal M HoffmanDepartment of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.
Kimberly F GrecoBiostatistics and Research Design Center, Institutional Centers for Clinical and Translational Research, Boston Children's Hospital, Boston, 02115, USA.
Edie WellerDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA 02115, USA.
Paul R ThompsonProgram in Chemical Biology and Department of Biochemistry and Molecular Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.ORCID 0000-0002-1621-3372
Lai Ping WongDepartment of Molecular Biology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.
Ruslan SadreyevDepartment of Genetics, Harvard Medical School, Boston, MA 02114, USA.ORCID 0000-0002-4240-5466
Kate L JeffreyDepartment of Medicine, Division of Gastroenterology and the Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Harvard Medical School, Boston MA 02114, USA.ORCID 0000-0001-5746-0153
Ben A CrokerDepartment of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-0885-3599
University of California San Diego · USBoston Children's Hospital · USHarvard University · USMassachusetts General Hospital · USScripps Research Institute · USUniversity of Massachusetts Chan Medical School · USLa Jolla Institute for Immunology · USNikon (United States) · USTel Aviv University · IL

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI JENNIFER W MACK · 1985 to 2026
$330.6M
ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Elizabeth Austen Lawson, Takara Leah Stanley · 1994 to 2026
$31.6M
Neutrophil Survival and Demise During Inflammatory StatesP01HL152958 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI HOFFMAN, HAROLD M · 2021 to 2025
$12.4M
Chemical probes to decipher PAD biologyR35GM118112 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Paul R Thompson · 2016 to 2026
$9.5M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Vesicular trafficking mechanisms regulating granulocyte functionR01HL088256 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI Sergio Daniel Catz · 2009 to 2026
$9.0M
Defining the roles of RIPK1 and RIPK3 in emergency hematopoiesisR01HL124209 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CROKER, BEN ADAM · 2015 to 2019
$2.2M
The Neutrophil Lineage in InflammasomopathiesR01AI155869 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CROKER, BEN ADAM, HOFFMAN, HAROLD M · 2020 to 2024
$2.0M
Understanding the role of Epigenetic Reader SP140 in IBDR01DK119996 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI ANTHONY, ROBERT MCCULLOUGH · 2018 to 2021
$1.2M
JEOL JEM-1400Plus Transmission Electron MicroscopeS10OD023527 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FARQUHAR, MARILYN GIST · 2017 to 2017
$579k
Distinguishing immunomodulatory intestinal viruses through examination of viruses attached to RIG-I and MDA-5R21AI144877 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI JEFFREY, KATE LOUISA · 2019 to 2020
$472k
NCI NIH HHS P30 CA006516NHLBI NIH HHS P01 HL152958NHLBI NIH HHS R01 HL088256NHLBI NIH HHS R01 HL124209NIAID NIH HHS R01 AI155869NIAID NIH HHS R21 AI144877NIDDK NIH HHS P30 DK040561NIDDK NIH HHS R01 DK119996NIGMS NIH HHS R35 GM118112NIH HHS S10 OD023527NINDS NIH HHS P30 NS047101
6 · The paper itself

Abstract

Neutrophil extracellular traps (NETs) not only counteract bacterial and fungal pathogens but can also promote thrombosis, autoimmunity, and sterile inflammation. The presence of citrullinated histones, generated by the peptidylarginine deiminase 4 (PAD4), is synonymous with NETosis and is considered independent of apoptosis. Mitochondrial- and death receptor-mediated apoptosis promote gasdermin E (GSDME)-dependent calcium mobilization and membrane permeabilization leading to histone H3 citrullination (H3Cit), nuclear DNA extrusion, and cytoplast formation. H3Cit is concentrated at the promoter in bone marrow neutrophils and redistributes in a coordinated process from promoter to intergenic and intronic regions during apoptosis. Loss of GSDME prevents nuclear and plasma membrane disruption of apoptotic neutrophils but prolongs early apoptosis-induced cellular changes to the chromatin and cytoplasmic granules. Apoptotic signaling engages PAD4 in neutrophils, establishing a cellular state that is primed for NETosis, but that occurs only upon membrane disruption by GSDME, thereby redefining the end of life for neutrophils.

Indexed as

Extracellular TrapsNeutrophilsEpigenesis, GeneticHistonesProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4HistonesProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4

Identifiers

PMID38117877
PMCPMC10732518
OpenAlexW4390021887

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.