Evidence map›Paper›PMID 38116432›Full record

ArticleACS medicinal chemistry letters2023

MAIP: An Open-Source Tool to Enrich High-Throughput Screening Output and Identify Novel, Druglike Molecules with Antimalarial Activity.

Nicolas Bosc, Eloy Felix, J Mark F Gardner, James Mills, Martijn Timmerman, Dennis Asveld, Kim Rensen, Partha Mukherjee, Rishi Das, Elodie Chenu and 6 more

Open access · hybridAbstract read
In one paragraph

Article in ACS medicinal chemistry letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 4 countries.

Nicolas BoscEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom.ORCID https://orcid.org/0000-0003-3562-1328
Eloy FelixEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom.ORCID https://orcid.org/0000-0002-5512-6810
J Mark F GardnerAMG Consultants Ltd, Discovery Park House, Discovery Park, Sandwich, Kent CT13 9ND, United Kingdom.ORCID https://orcid.org/0000-0002-9322-1181
James MillsSandexis Medicinal Chemistry Ltd, Innovation House, Discovery Park, Sandwich, Kent CT13 9FF, United Kingdom.ORCID https://orcid.org/0000-0002-2567-3872
Martijn TimmermanPivot Park Screening Centre, Pivot Park (Frederick Banting Building), Kloosterstraat 9, 5349 AB Oss, The Netherlands.
Dennis AsveldPivot Park Screening Centre, Pivot Park (Frederick Banting Building), Kloosterstraat 9, 5349 AB Oss, The Netherlands.
Kim RensenPivot Park Screening Centre, Pivot Park (Frederick Banting Building), Kloosterstraat 9, 5349 AB Oss, The Netherlands.
Partha MukherjeeTCG Life Sciences, Bengal Intelligent Park Limited, Block EP & GP, Salt Lake Electronics Complex, Sector V, Kolkata, West Bengal 700091, India.
Rishi DasTCG Life Sciences, Bengal Intelligent Park Limited, Block EP & GP, Salt Lake Electronics Complex, Sector V, Kolkata, West Bengal 700091, India.
Elodie ChenuMedicines for Malaria Ventures, 1215 Geneva, Switzerland.
Dominique BessonMedicines for Malaria Ventures, 1215 Geneva, Switzerland.
Jeremy N BurrowsMedicines for Malaria Ventures, 1215 Geneva, Switzerland.ORCID https://orcid.org/0000-0001-8448-6068
James DuffyMedicines for Malaria Ventures, 1215 Geneva, Switzerland.ORCID https://orcid.org/0000-0002-9447-8982
Benoît LaleuMedicines for Malaria Ventures, 1215 Geneva, Switzerland.ORCID https://orcid.org/0000-0002-7530-2113
Eric M GuantaiDepartment of Pharmacy, Faculty of Health Sciences, University of Nairobi, 00202 Nairobi, Kenya.
Andrew R LeachEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom.
Medicines for Malaria Venture · CHEuropean Bioinformatics Institute · GBTCG Lifesciences (India) · INUniversity of Nairobi · KE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Efforts to tackle malaria must continue for a disease that threatens half of the global population. Parasite resistance to current therapies requires new chemotypes that are able to demonstrate effectiveness and safety. Previously, we developed a machine-learning-based approach to predict compound antimalarial activity, which was trained on the compound collections of several organizations. The resulting prediction platform, MAIP, was made freely available to the scientific community and offers a solution to prioritize molecules of interest in virtual screening and hit-to-lead optimization. Here, we experimentally validate MAIP and demonstrate how the approach was used in combination with a robust compound selection workflow and a recently introduced innovative high-throughput screening (HTS) cascade to select and purchase compounds from a public library for subsequent experimental screening. We observed a 12-fold enrichment compared with a randomly selected set of molecules, and the eight hits we ultimately selected exhibit good potency and absorption, distribution, metabolism, and excretion (ADME) profiles.

Identifiers

PMID38116432
PMCPMC10726451
OpenAlexW4388834855

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.