Evidence map›Paper›PMID 38116032›Full record

ArticlebioRxiv : the preprint server for biology2024

behaviorMate: An

John C Bowler, George Zakka, Hyun Choong Yong, Wenke Li, Bovey Rao, Zhenrui Liao, James B Priestley, Attila Losonczy

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

  • Updated by
    An2025
5 · Who and what money

Authors and funding

8 authors.

John C BowlerDepartment of Neuroscience.ORCID 0000-0003-0498-5743
George ZakkaDepartment of Neuroscience.ORCID 0009-0005-0035-6749
Hyun Choong YongDepartment of Neuroscience.ORCID 0000-0002-1841-6317
Wenke LiAquabyte, San Francisco, CA 94111.
Bovey RaoDepartment of Neuroscience.ORCID 0000-0002-2280-0119
Zhenrui LiaoDepartment of Neuroscience.
James B PriestleyBrain Mind Institute, École polytechnique fédérale de Lausanne.
Attila LosonczyDepartment of Neuroscience.ORCID 0000-0002-7064-0252

Funding

Optimization, application and dissemination of high-speed hybrid multiphoton volumetric imaging technologiesU01NS115530 · NINDS · ROCKEFELLER UNIVERSITY · PI LOSONCZY, ATTILA, VAZIRI, ALIPASHA · 2020 to 2023
$4.7M
Microcircuit, cellular and molecular dissection of impaired hippocampal function in a mouse model of the 22q11.2 deletionR01MH124047 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GOGOS, JOSEPH A, LOSONCZY, ATTILA · 2020 to 2024
$3.8M
Experimental and modeling investigations into microcircuit, cellular and subcellular determinants of hippocampal ensemble recruitment to contextual representationsR01MH124867 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LOSONCZY, ATTILA, POIRAZI, PANAYIOTA · 2021 to 2025
$3.4M
Control of Axon Initial Segment in EpilepsyR01NS121106 · NINDS · STANFORD UNIVERSITY · PI LOSONCZY, ATTILA, SOLTESZ, IVAN · 2021 to 2025
$3.4M
Local Circuit Control of Rapid Plasticity and Tunable Ensemble Formation in the HippocampusRF1NS133381 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LOSONCZY, ATTILA, SOLTESZ, IVAN · 2023 to 2023
$2.6M
Dissecting the role of the dentate gyrus microcircuit to improve cognitive discrimination in aging and Alzheimer's DiseaseRF1AG080818 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FUSI, STEFANO, HEN, RENE · 2023 to 2023
$2.5M
Activity-dependent endocannabinoid control in epilepsyR01NS131728 · NINDS · STANFORD UNIVERSITY · PI Attila Losonczy, IVAN SOLTESZ · 2023 to 2026
$2.3M
Characterizing Direct Cortical Influences on Hippocampal CA1 Population Dynamics in Behaving MiceF31NS110316 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BOWLER, JOHN · 2018 to 2020
$140k
NIA NIH HHS RF1 AG080818NIMH NIH HHS R01 MH124047NIMH NIH HHS R01 MH124867NINDS NIH HHS F31 NS110316NINDS NIH HHS R01 NS121106NINDS NIH HHS R01 NS131728NINDS NIH HHS RF1 NS133381NINDS NIH HHS U01 NS115530
6 · The paper itself

Abstract

Investigators conducting behavioral experiments often need precise control over the timing of the delivery of stimuli to subjects and to collect the precise times of the subsequent behavioral responses. Furthermore, investigators want fine-tuned control over how various multi-modal cues are presented. behaviorMate takes an "Intranet of Things" approach, using a networked system of hardware and software components for achieving these goals. The system outputs a file with integrated timestamp-event pairs that investigators can then format and process using their own analysis pipelines. We present an overview of the electronic components and GUI application that make up behaviorMate as well as mechanical designs for compatible experimental rigs to provide the reader with the ability to set up their own system. A wide variety of paradigms are supported, including goal-oriented learning, random foraging, and context switching. We demonstrate behaviorMate's utility and reliability with a range of use cases from several published studies and benchmark tests. Finally, we present experimental validation demonstrating different modalities of hippocampal place field studies. Both treadmill with burlap belt and virtual reality with running wheel paradigms were performed to confirm the efficacy and flexibility of the approach. Previous solutions rely on proprietary systems that may have large upfront costs or present frameworks that require customized software to be developed. behaviorMate uses open-source software and a flexible configuration system to mitigate both concerns. behaviorMate has a proven record for head-fixed imaging experiments and could be easily adopted for task control in a variety of experimental situations.

Identifiers

PMID38116032
PMCPMC10729741

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.