Evidence map›Paper›PMID 38115231›Full record

ArticleProtein science : a publication of the Protein Society2024

4-Thiaproline accelerates the slow folding phase of proteins containing cis prolines in the native state by two orders of magnitude.

Jennie O' Loughlin, Kirill Zinovjev, Silvia Napolitano, Marc van der Kamp, Marina Rubini

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Jennie O' LoughlinSchool of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.
Kirill ZinovjevSchool of Biochemistry, University of Bristol, Bristol, UK.
Silvia NapolitanoDepartment of Molecular Biology and Biophysics, ETH Zürich, Zürich, Switzerland.
Marc van der KampSchool of Biochemistry, University of Bristol, Bristol, UK.
Marina RubiniSchool of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland.ORCID 0000-0002-3102-2558
University College Dublin · IEETH Zurich · CHUniversitat de València · ESUniversity of Bristol · GB

Funding

BBSRCUniversity College Dublin
6 · The paper itself

Abstract

The cis/trans isomerization of peptidyl-prolyl peptide bonds is often the bottleneck of the refolding reaction for proteins containing cis proline residues in the native state. Proline (Pro) analogues, especially C4-substituted fluoroprolines, have been widely used in protein engineering to enhance the thermodynamic stability of peptides and proteins and to investigate folding kinetics. 4-thiaproline (Thp) has been shown to bias the ring pucker of Pro, to increase the cis population percentage of model peptides in comparison to Pro, and to diminish the activation energy barrier for the cis/trans isomerization reaction. Despite its intriguing properties, Thp has been seldom incorporated into proteins. Moreover, the impact of Thp on the folding kinetics of globular proteins has never been reported. In this study, we show that upon incorporation of Thp at cisPro76 into the thioredoxin variant Trx1P the half-life of the refolding reaction decreased from ~2 h to ~35 s. A dramatic acceleration of the refolding rate could be observed also for the protein pseudo wild-type barstar upon replacement of cisPro48 with Thp. Quantum chemical calculations suggested that the replacement of the C

Indexed as

ProlineProtein FoldingKineticsPeptidesProtein ConformationThiazolidinesPeptidesProlinethiazolidine-4-carboxylic acidThiazolidines4-thiaprolinecis/trans isomerizationprolineprotein folding

Identifiers

PMID38115231
PMCPMC10804670
OpenAlexW4390012189

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.