Evidence map›Paper›PMID 38113934›Full record

ArticleOpen biology2023

Mitochondrial replication's role in vertebrate mtDNA strand asymmetry.

André Gomes-Dos-Santos, Nair Vilas-Arrondo, André M Machado, Esther Román-Marcote, Jose Luís Del Río Iglesias, Francisco Baldó, Montse Pérez, Miguel M Fonseca, L Filipe C Castro, Elsa Froufe

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2026
    Article
  4. Article
  5. Mitogenomic Profiling ofEcology and evolution · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

André Gomes-Dos-SantosCIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.ORCID 0000-0001-9973-4861
Nair Vilas-ArrondoPrograma de Doctorado 'Ciencias marinas, Tecnología y Gestión' (Do*MAR), Universidad de Vigo, Vigo, Spain.ORCID 0000-0001-6200-7513
André M MachadoCIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.ORCID 0000-0002-6857-7581
Esther Román-MarcoteCentro Oceanográfico de Vigo (COV), Instituto Español de Oceanografía (IEO-CSIC), Subida a Radio Faro, 50, Vigo (Pontevedra), 36390, Spain.
Jose Luís Del Río IglesiasCentro Oceanográfico de Vigo (COV), Instituto Español de Oceanografía (IEO-CSIC), Subida a Radio Faro, 50, Vigo (Pontevedra), 36390, Spain.
Francisco BaldóCentro Oceanográfico de Cádiz (COCAD), Instituto Español de Oceanografía (IEO-CSIC), Puerto Pesquero, Muelle de Levante s/n, Cádiz, 11006, Spain.ORCID 0000-0003-4220-4207
Montse PérezCentro Oceanográfico de Vigo (COV), Instituto Español de Oceanografía (IEO-CSIC), Subida a Radio Faro, 50, Vigo (Pontevedra), 36390, Spain.
Miguel M FonsecaCIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.
L Filipe C CastroCIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.ORCID 0000-0001-7697-386X
Elsa FroufeCIIMAR/CIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Matosinhos, Portugal.ORCID 0000-0003-0262-0791
Instituto Español de Oceanografía · ESUniversidade do Porto · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitogenomes are defined as compact and structurally stable over aeons. This perception results from a vertebrate-centric vision, where few types of mtDNA rearrangements are described. Here, we bring a new light to the involvement of mitochondrial replication in the strand asymmetry of the vertebrate mtDNA. Using several species of deep-sea hatchetfish (Sternoptychidae) displaying distinct mtDNA structural arrangements, we unravel the inversion of the coding direction of protein-coding genes (PCGs). This unexpected change is coupled with a strand asymmetry nucleotide composition reversal and is shown to be directly related to the strand location of the Control Region (CR). An analysis of the fourfold redundant sites of the PCGs (greater than 6000 vertebrates), revealed the rarity of this phenomenon, found in nine fish species (five deep-sea hatchetfish). Curiously, in Antarctic notothenioid fishes (Trematominae), where a single PCG inversion (the only other record in fish) is coupled with the inversion of the CR, the standard asymmetry is disrupted for the remaining PCGs but not yet reversed, suggesting a transitory state. Our results hint that a relaxation of the classic vertebrate mitochondrial structural

Indexed as

DNA, MitochondrialGenome, MitochondrialAnimalsFishesMitochondriaDNA, Mitochondrialdeep-sea fishmitochondrial gene ordermitogenomerearrangementsstrand asymmetry

Identifiers

PMID38113934
PMCPMC10730292
OpenAlexW4389975300

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.