Evidence map›Paper›PMID 38113455›Full record

ArticleBiochemistry2024

A Monochromatically Excitable Green-Red Dual-Fluorophore Fusion Incorporating a New Large Stokes Shift Fluorescent Protein.

J Obinna Ejike, Mayuri Sadoine, Yi Shen, Yuuma Ishikawa, Erdem Sunal, Sebastian Hänsch, Anna B Hamacher, Wolf B Frommer, Michael M Wudick, Robert E Campbell and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Biochemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

J Obinna EjikeHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute for Molecular Physiology, Düsseldorf 40225, Germany.
Mayuri SadoineHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute for Molecular Physiology, Düsseldorf 40225, Germany.ORCID 0000-0003-0217-6731
Yi ShenDepartment of Chemistry, University of Alberta, Edmonton T6G 2G2, Canada.ORCID 0000-0003-4117-0279
Yuuma IshikawaHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute for Molecular Physiology, Düsseldorf 40225, Germany.
Erdem SunalHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute for Molecular Physiology, Düsseldorf 40225, Germany.
Sebastian HänschHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Centre for Advanced Imaging, Düsseldorf 40225, Germany.
Anna B HamacherHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Centre for Advanced Imaging, Düsseldorf 40225, Germany.
Wolf B FrommerHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute for Molecular Physiology, Düsseldorf 40225, Germany.ORCID 0000-0001-6465-0115
Michael M WudickHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute for Molecular Physiology, Düsseldorf 40225, Germany.ORCID 0000-0002-4332-369X
Robert E CampbellDepartment of Chemistry, University of Alberta, Edmonton T6G 2G2, Canada.ORCID 0000-0003-0604-092X
Thomas J KleistHeinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute for Molecular Physiology, Düsseldorf 40225, Germany.ORCID 0000-0003-2568-7323
Heinrich Heine University Düsseldorf · DECluster of Excellence on Plant Sciences · DEUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetically encoded sensors enable quantitative imaging of analytes in live cells. Sensors are commonly constructed by combining ligand-binding domains with one or more sensitized fluorescent protein (FP) domains. Sensors based on a single FP can be susceptible to artifacts caused by changes in sensor levels or distribution in vivo. To develop intensiometric sensors with the capacity for ratiometric quantification, dual-FP Matryoshka sensors were generated by using a single cassette with a large Stokes shift (LSS) reference FP nested within the reporter FP (cpEGFP). Here, we present a genetically encoded calcium sensor that employs green apple (GA) Matryoshka technology by incorporating a newly designed red LSSmApple fluorophore. LSSmApple matures faster and provides an optimized excitation spectrum overlap with cpEGFP, allowing for monochromatic coexcitation with blue light. The LSS of LSSmApple results in improved emission spectrum separation from cpEGFP, thereby minimizing fluorophore bleed-through and facilitating imaging using standard dichroic and red FP (RFP) emission filters. We developed an image analysis pipeline for yeast (

Indexed as

CalciumSaccharomyces cerevisiaeFluorescent DyesLuminescent ProteinsRed Fluorescent ProteinCalciumFluorescent DyesLuminescent ProteinsRed Fluorescent Protein

Identifiers

PMID38113455
PMCPMC10765376
OpenAlexW4389943291

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.