Evidence map›Paper›PMID 38113368›Full record

ArticleJournal of proteome research2024

In-Depth Proteome Profiling of Small Extracellular Vesicles Isolated from Cancer Cell Lines and Patient Serum.

Komal Abhange, Reta Birhanu Kitata, Jie Zhang, Yi-Ting Wang, Matthew J Gaffrey, Tao Liu, Valerie Gunchick, Valerie Khaykin, Vaibhav Sahai, Kyle C Cuneo and 3 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Isolation of extracellular vesicles from insect hemolymph.Current research in insect science · 2025
    Review
  5. Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Komal AbhangeDepartment of Surgery, University of Michigan Medical Center, Ann Arbor, Michigan 48109, United States.ORCID 0009-0001-6834-928X
Reta Birhanu KitataBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.ORCID 0000-0002-8973-7679
Jie ZhangDepartment of Surgery, University of Michigan Medical Center, Ann Arbor, Michigan 48109, United States.
Yi-Ting WangBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.
Matthew J GaffreyBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.
Tao LiuBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.ORCID 0000-0001-9529-6550
Valerie GunchickDepartment of Internal Medicine, University of Michigan, Ann Arbor, Michigan 48109, United States.
Valerie KhaykinDepartment of Internal Medicine, University of Michigan, Ann Arbor, Michigan 48109, United States.ORCID 0000-0001-9754-1943
Vaibhav SahaiDepartment of Internal Medicine, University of Michigan, Ann Arbor, Michigan 48109, United States.
Kyle C CuneoDepartment of Radiation Oncology, University of Michigan, Ann Arbor, Michigan 48109, United States.
Neehar D ParikhDepartment of Internal Medicine, University of Michigan, Ann Arbor, Michigan 48109, United States.
Tujin ShiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.ORCID 0000-0002-5592-3588
David M LubmanDepartment of Surgery, University of Michigan Medical Center, Ann Arbor, Michigan 48109, United States.ORCID 0000-0001-7731-0232

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Eric R. Fearon · 1988 to 2026
$178.2M
Tumor Biology and Microenvironment (Program 1)P30CA022453 · NCI · WAYNE STATE UNIVERSITY · PI PAUL M STEMMER · 1985 to 2026
$68.4M
Pilot Project ProgramP30ES020957 · NIEHS · WAYNE STATE UNIVERSITY · PI RUNGE-MORRIS, MELISSA A · 2014 to 2021
$10.1M
Universal Internal Standard for Reproducible Accurate Quantification of Exosome Protein MarkersR01CA258240 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI David M. Lubman, Tujin Shi · 2022 to 2026
$2.3M
Targeted proteomics technology for accurate quantitative single-cell proteomicsR01GM139858 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SHI, TUJIN · 2021 to 2024
$1.6M
Orbitrap Tribrid Mass Spectrometer for Wayne State ProteomicsS10OD030484 · OD · WAYNE STATE UNIVERSITY · PI STEMMER, PAUL M · 2021 to 2021
$1.3M
NCI NIH HHS P30 CA022453NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA258240NIEHS NIH HHS P30 ES020957NIGMS NIH HHS R01 GM139858NIH HHS S10 OD030484
6 · The paper itself

Abstract

Extracellular vesicle (EV) secretion has been observed in many types of both normal and tumor cells. EVs contain a variety of distinctive cargoes, allowing tumor-derived serum proteins in EVs to act as a minimally invasive method for clinical monitoring. We have undertaken a comprehensive study of the protein content of the EVs from several cancer cell lines using direct data-independent analysis. Several thousand proteins were detected, including many classic EV markers such as CD9, CD81, CD63, TSG101, and Syndecan-1, among others. We detected many distinctive cancer-specific proteins, including several known markers used in cancer detection and monitoring. We further studied the protein content of EVs from patient serum for both normal controls and pancreatic cancer and hepatocellular carcinoma. The EVs for these studies have been isolated by various methods for comparison, including ultracentrifugation and CD9 immunoaffinity column. Typically, 500-1000 proteins were identified, where most of them overlapped with the EV proteins identified from the cell lines studied. We were able to identify many of the cell-line EV protein markers in the serum EVs, in addition to the large numbers of proteins specific to pancreatic and HCC cancers.

Indexed as

Carcinoma, HepatocellularExtracellular VesiclesLiver NeoplasmsBiomarkersCell Line, TumorHumansProteomeBiomarkersProteomeCD9EV proteinsextracellular vesiclesHCCimmunoaffinitypancreatic cancerultracentrifugation

Identifiers

PMID38113368
PMCPMC10947532

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.