Evidence map›Paper›PMID 38111060›Full record

ArticleEuropean journal of medical research2023

Risk factors analysis and survival prediction model establishment of patients with lung adenocarcinoma based on different pyroptosis-related gene subtypes.

Ziang Wen, Bei Pei, Longfei Dai, Peng Lu, Xiangyu Li, Chengxin Zhang, Shenglin Ge

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Article in European journal of medical research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Ziang Wen *Department of Cardiovascular Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Bei Pei *The Graduated School, Anhui University of Traditonal Chinese Medicine, Hefei, China.
Longfei DaiThe Graduated School, Anhui Medical University, Hefei, China.
Peng LuDepartment of Cardiovascular Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Xiangyu LiDepartment of Cardiovascular Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Chengxin ZhangDepartment of Cardiovascular Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, China.
Shenglin GeDepartment of Cardiovascular Surgery, The First Affiliated Hospital of Anhui Medical University, Hefei, China. geshenglin@ahmu.edu.cn.

Funding

Anhui Provincial Natural Science Foundation of China 1808085MH279
6 · The paper itself

Abstract

backgroundLung adenocarcinoma (LUAD) is a common cancer with a poor prognosis. Pyroptosis is an important process in the development and progression of LUAD. We analyzed the risk factors affecting the prognosis of patients and constructed a nomogram to predict the overall survival of patients based on different pyroptosis-related genes (PRGs) subtypes.

methodsThe genomic data of LUAD were downloaded from the TCGA and GEO databases, and all data were filtered and divided into TCGA and GEO cohorts. The process of data analysis and visualization was performed via R software. The data were classified based on different PRGs subtypes using the K-means clustering method. Then, the differentially expressed genes were identified between two different subtypes, and risk factors analysis, survival analysis, functional enrichment analysis, and immune cells infiltration landscape analysis were conducted. The COX regression analysis was used to construct the prediction model.

resultsBased on the PRGs of LUAD, the patients were divided into two subtypes. We found the survival probability of patients in subtype 1 is higher than that in subtype 2. The results of the logistics analysis showed that gene risk score was closely associated with the prognosis of LUAD patients. The results of GO analysis and KEGG analysis revealed important biological processes and signaling pathways involved in the differentially expressed proteins between the two subtypes. Then we constructed a prediction model of patients' prognosis based on 13 genes, including IL-1A, P2RX1, GSTM2, ESYT3, ZNF682, KCNF1, STK32A, HHIPL2, GDF10, NDC80, GSTA1, BCL2L10, and CCR2. This model was strongly related to the overall survival (OS) and also reflects the immune status in patients with LUAD.

conclusionIn our study, we examined LUAD heterogeneity with reference to pyroptosis and found different prognoses between the two subtypes. And a novel prediction model was constructed to predict the OS of LUAD patients based on different PRGs signatures. The model has shown excellent predictive efficiency through validation.

Indexed as

Adenocarcinoma of LungLung NeoplasmsGenetic Risk ScoreHumansPrognosisPyroptosisRisk FactorsSynaptotagminsESYT3 protein, humanSynaptotagminsGeneLung adenocarcinomaPyroptosisSignatureSurvival

Identifiers

PMID38111060
PMCPMC10726488

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